Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34120 267 / 1e-90 CBSX2, CDCP1, LEJ1 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) AT4G36910 259 / 2e-87 CBSX1, CDCP2, LEJ2 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G303900 [exp] 354 / 6e-125 AT4G34120 267 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G140800 [exp] 263 / 6e-89 AT4G36910 300 / 6e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.007G046400 [exp] 262 / 8e-89 AT4G36910 301 / 5e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.017G000100 [exp] 42 / 0.0002 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.015G098100 [exp] 41 / 0.0005 AT5G50530 628 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.013G161500 [exp] 40 / 0.0007 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002834 [exp] 246 / 6e-82 AT4G34120 260 / 2e-87 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Lus10004992 [exp] 212 / 2e-68 AT4G36910 248 / 1e-82 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Lus10041576 [exp] 181 / 1e-56 AT4G36910 206 / 2e-66 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Lus10027885 [exp] 150 / 4e-44 AT4G34120 157 / 8e-47 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.009G099200.2 pacid=42772604 polypeptide=Potri.009G099200.2.p locus=Potri.009G099200 ID=Potri.009G099200.2.v4.1 annot-version=v4.1 ATGGCTTCTGTCGCAAACACATTACTTTCTCTGCCCCCCTCACTCTGTTTTAATTCTAATTCTAATTCTAATAATAATCAGTCACCGCCACCTTCTCTTT TTGTTTCCAAGGCTCCCAGATCAAAGCGTTGTCGTTTTCACTCCTCCGCGGGATCACCTAACCGTTCTTCTGTAACCGTTTCCTTGTCTACTGTGGCAAA CTCTGTTCCGGCGAGAAGTAAGATCCATACAGTTGGTGATTTTATGACCAAAAGAGAGGATTTACATGTGTTTAAAGCCAACACAACTGTTGATGAAGCA TTGGAGGCTCTTGTGGAGAAGAGAATAACGGGGTTTCCTGTCATTGATGATAACTGGAAATTGGTTGGTGTTGTTTCTGATTATGACCTGTTAGTGCTCG GTTCTATTTCAGGCAGCTGTCAGAATGACACAAACTTGTTTCCTAATGTTGATAGTTCTTGGAAGACTTTCAATGAGTTACAGAAACTGCTAATCAAGAA CAACGGCAAAGTTGTTGGTGATTTGATGACACCCAATCCTCTAGTCGTTTATGAAACCACCAATCTAGAGGATGCTGTTAGGTTGCTGCTTGAAACAAAG TATCGGCGACTCCCAGTGGTAGATAACGATGGAAAGCTGGTTGGAATCATTACTCGGGGAGACATTGTTAGAGCTTCTCAACAGATAAAAAGCTCCACCG AAAGATCAACATGA
AA sequence Show only first row Show all	>Potri.009G099200.2 pacid=42772604 polypeptide=Potri.009G099200.2.p locus=Potri.009G099200 ID=Potri.009G099200.2.v4.1 annot-version=v4.1 MASVANTLLSLPPSLCFNSNSNSNNNQSPPPSLFVSKAPRSKRCRFHSSAGSPNRSSVTVSLSTVANSVPARSKIHTVGDFMTKREDLHVFKANTTVDEA LEALVEKRITGFPVIDDNWKLVGVVSDYDLLVLGSISGSCQNDTNLFPNVDSSWKTFNELQKLLIKNNGKVVGDLMTPNPLVVYETTNLEDAVRLLLETK YRRLPVVDNDGKLVGIITRGDIVRASQQIKSSTERST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Potri.009G099200 [exp]	0	1
AT4G37290			unknown protein		Potri.016G015600 [exp]	5.09	0.9719
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Potri.009G098966 [exp]	5.65	0.9673
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Potri.014G014000 [exp]	7.34	0.9701
AT4G37290			unknown protein		Potri.005G142900 [exp]	9.53	0.9679
AT5G44440			FAD-binding Berberine family p...		Potri.011G158100 [exp]	11.22	0.9682
					Potri.006G008132 [exp]	11.31	0.9698
AT4G28940			Phosphorylase superfamily prot...		Potri.006G161538 [exp]	12.36	0.9660
					Potri.018G091032 [exp]	14.83	0.9624
AT5G63380			AMP-dependent synthetase and l...		Potri.010G057000 [exp]	15.29	0.9584	Ptr4CL12
					Potri.019G017304 [exp]	15.42	0.9561

Compare expression of checked genes

Potri.009G099200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.