Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34110 848 / 0 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G49760 721 / 0 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT2G23350 608 / 0 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G22760 521 / 2e-178 PAB3 poly(A) binding protein 3 (.1) AT1G71770 501 / 3e-170 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G34140 350 / 3e-115 PAB1 poly(A) binding protein 1 (.1) AT2G36660 349 / 4e-112 PAB7 poly(A) binding protein 7 (.1) AT3G16380 309 / 2e-97 PAB6 poly(A) binding protein 6 (.1) AT2G18510 128 / 3e-32 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G27000 104 / 7e-24 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304000 [exp] 1062 / 0 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.014G025400 [exp] 759 / 0 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G124200 [exp] 749 / 0 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.005G198500 [exp] 695 / 0 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.002G062700 [exp] 563 / 0 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.001G191500 [exp] 319 / 4e-101 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.007G028300 [exp] 130 / 5e-33 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G125300 [exp] 112 / 1e-26 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G128100 [exp] 104 / 1e-23 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002835 [exp] 936 / 0 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 895 / 0 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 883 / 0 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 757 / 0 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10014392 [exp] 404 / 7e-133 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 393 / 2e-128 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10027733 [exp] 393 / 3e-128 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10035556 [exp] 389 / 1e-121 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021396 [exp] 280 / 3e-86 AT1G49760 351 / 6e-114 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10019838 [exp] 137 / 4e-35 AT1G49760 192 / 3e-55 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF00658 [poplar] [flax] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Potri.009G099300.1 pacid=42772159 polypeptide=Potri.009G099300.1.p locus=Potri.009G099300 ID=Potri.009G099300.1.v4.1 annot-version=v4.1 ATGGCACAGGTTCAAGTACCGGCGCAGCCACAGAATGTGAATGGAGGGGCTAATAACCCAAATTTTGTAACGACATCGCTTTATGTGGGTGATTTGGAAG CGAATGTGACTGATTCCCAGTTGTATGATCTGTTTAATCAAGTGGGTCAAGTGGTTTCCGTCAGGGTTTGCAGGGACCTGACGAGCCGCAGGTCCCTTGG TTATGGTTATGTTAACTACAGCAATCCTCAAGATGCTGCAAGGGCATTGGAAGTGCTGAATTTCACTCCAGTGAATGGAAGTCCAATCAGGGTTATGTAT TCCCATCGTGACCCGAGTGTTCGCAAAAGTGGGGCAGGAAATATATTTATTAAGAATTTGGACAAGGCAATTGACCACAAAGCACTGCATGACACATTTT CAGTATTTGGGAACATTCTCTCTTGCAAGGTTGCTACTGACCCCTCTGGCCAGTCAAAAGGCTATGGGTTTGTGCAGTTTGACAGCGAGGAAGCTGCTCA AAAAGCGATTGAGAAACTGAATGGCATGCTGTTGAATGATAAGCAAGTTTACGTGGGACCTTTCCTTCGCAAGCAGGAAAGGGATACTGCCACTGACAAG ACAAGATTCAACAATGTTTTTGTGAAGAATCTATCCGAAACGACAGCTGAGGAGGATTTGAACAAAGCTTTTGGTGAATTTGGAACTATCACCAGTGTTG TGGTGATGAGGGATGGTGATGGAAAGTCTAGGTGCTTTGGATTTGTGAACTTTGAGAATGCAGATGATGCTGCTAAAGCAGCGGAGGCTCTTAATGGAAA GAAATTTGATGACAAGGAATGGTTTGTTGGGAAAGCTCAGAAAAAATATGAAAGGGAAGTCGAGTTAAAACAACGGTTTGAGCAGAGCATGAAGGAAGCA GCTGACAAATTTCAGGGTGCAAATTTGTACATTAAAAATTTAGATGATAGCATAGGTGATGAGAAAATTAAGGAGCTGTTTTCTCCATTTGGTACAATCA CGTCTTGCAAGGTTATGCGAGACCCGAATGGAATAAGCAGAGGATCAGGGTTTGTTGCATTCTCAACTCCTGAAGAGGCATCAAGAGCTCTATTGGAGAT GAACGGGAAAATGGTTGCTAGCAAACCTCTATATGTTGCCCTTGCACAAAGAAAGGAAGATAGAAGAGCCAGGTTGCAGGCTCAGTTTTCTCAAATGCGA CCAGTTGCAATGGCACCTTCAGTTGGTCGTATGCCAATGTACCCCCCTACTGGTCCCGGTCTTGGACAACAAATATTCTATGGACAAGGCCCACCTGCTA TCATGCCACCCCAGCCTGGATTTGGGTATCAACAACAGCTAGTGCCTGGTATGAGGCCTGGAGGGGCTCCTATGCCAAATTTCTTTGTGCCAATGGTTCA GCAGGGGCAGCAAGGTCAGCGTCCTGGTGGTCGACGGGCAGGTACTGGCCAGCAATCCCAGCAGCCAGTCCAGCTAATGCAGCAGCAGATGCTTCCTAGG GGACGTGTCTATCGCTACCCTCCAGGACGTGGATTGCCTGATGTTCCAATGACTGGTGTTGCTGGAGGCATGCTTTCTGTTCCATATGACATGGGTGGTA TGCCAATGCGTGATGCAGCGCTGTCCCAGCCAATTCCCATAGGGGCTTTGGCTACTGCACTTGCAAATGCTACTCCAGATCAGCAGAGAACGATGCTGGG AGAAAATCTGTACCCTCTTGTGGAGCAGCTGGAACCTGAAGCCGCAGCTAAAGTGACAGGCATGCTTCTGGAGATGGATCAGACTGAGGTTCTGCACTTG CTTGAGTCACCAGAAGCTCTCAAATCAAAGGTTAATGAGGCGATGGAGGTTCTAAGGACTGTTCAGCAGCAGGCCACTGGCACAGCTGATCAACTAGCCT CATTGTCACTGAACGACAACCTTGGGCCCTAG
AA sequence Show only first row Show all	>Potri.009G099300.1 pacid=42772159 polypeptide=Potri.009G099300.1.p locus=Potri.009G099300 ID=Potri.009G099300.1.v4.1 annot-version=v4.1 MAQVQVPAQPQNVNGGANNPNFVTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEVLNFTPVNGSPIRVMY SHRDPSVRKSGAGNIFIKNLDKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDTATDK TRFNNVFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKEA ADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMR PVAMAPSVGRMPMYPPTGPGLGQQIFYGQGPPAIMPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRRAGTGQQSQQPVQLMQQQMLPR GRVYRYPPGRGLPDVPMTGVAGGMLSVPYDMGGMPMRDAALSQPIPIGALATALANATPDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMDQTEVLHL LESPEALKSKVNEAMEVLRTVQQQATGTADQLASLSLNDNLGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Potri.009G099300 [exp]	0	1
AT3G53560			Tetratricopeptide repeat (TPR)...		Potri.016G081200 [exp]	2.44	0.8204
AT3G59890			Dihydrodipicolinate reductase,...		Potri.017G001900 [exp]	9.94	0.7407
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Potri.001G304000 [exp]	12.32	0.7705
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G187000 [exp]	13.71	0.7609
AT2G16650		PRORP2	proteinaceous RNase P 2 (.1)		Potri.004G185200 [exp]	18.08	0.7668
AT1G68570			Major facilitator superfamily ...		Potri.006G034000 [exp]	23.64	0.6960	NITR1.3
AT2G45950		ASK20	SKP1-like 20 (.1.2)		Potri.015G146500 [exp]	28.61	0.6662
AT2G16650		PRORP2	proteinaceous RNase P 2 (.1)		Potri.009G145200 [exp]	35.32	0.7030
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019833 [exp]	35.69	0.7109
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G189400 [exp]	47.69	0.6732

Compare expression of checked genes

Potri.009G099300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.