Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34100 1607 / 0 RING/U-box superfamily protein (.1.2) AT4G32670 241 / 3e-66 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G02960 63 / 3e-10 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT3G47550 61 / 5e-10 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT1G14260 61 / 1e-09 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G02610 58 / 6e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G06330 58 / 2e-08 RING/U-box superfamily protein (.1.2.3) AT5G62460 57 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01275 57 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 57 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304100 [exp] 1860 / 0 AT4G34100 1553 / 0.0 RING/U-box superfamily protein (.1.2) Potri.010G169200 [exp] 64 / 1e-10 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 61 / 8e-10 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.014G121900 [exp] 59 / 2e-09 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G196600 [exp] 57 / 9e-09 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G127400 [exp] 57 / 1e-08 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 57 / 2e-08 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.013G126600 [exp] 56 / 4e-08 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.010G014950 [exp] 56 / 1e-07 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019839 [exp] 1675 / 0 AT4G34100 1668 / 0.0 RING/U-box superfamily protein (.1.2) Lus10014076 [exp] 1568 / 0 AT4G34100 1575 / 0.0 RING/U-box superfamily protein (.1.2) Lus10030472 [exp] 62 / 7e-10 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10035271 [exp] 62 / 8e-10 AT2G01275 240 / 2e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10012826 [exp] 61 / 1e-09 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10036754 [exp] 60 / 2e-09 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10034640 [exp] 60 / 4e-09 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10019102 [exp] 59 / 7e-09 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10034454 [exp] 59 / 7e-09 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10038632 [exp] 59 / 2e-08 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.009G099400.4 pacid=42771430 polypeptide=Potri.009G099400.4.p locus=Potri.009G099400 ID=Potri.009G099400.4.v4.1 annot-version=v4.1 ATGGAGATCGACTCCGCGGTGGAACAACCACCACCACAACAGCCGATCACCTCCGCAACGGCCACCGACGGCGTAAACCAGACGCAGTCTCCATCGGGTT CGATGGGGAAAGAGGAGAGTGACGGAGTAAAGACGGTGTCGTTGTTGTCGGCGGCGAGGTTCGATGACGACGAGGAAGAGGAGGATGTTTGCAGGATCTG TAGAAATCCAGGAGATGCGGAGAATCCGTTACGGTATCCTTGCGCATGTAGTGGAAGTATTAAGTTTGTTCATCAGGATTGTCTCCTTCAGTGGCTTAAT CATAGTAATGCTCGCCAGTGCGAGGTTTGCAAACATCCTTTTTCTTTCTCTCCTGTTTATGCTGAGAATGCCCCAGCTAGGCTTCCTTTTCAGGAGTTTG TAGTAGGGATGACAATGAAGACTTGTCATGTTCTACAATTCTTTTTGCGTCTTAGTTTTGTGCTTTCAGTTTGGCTTCTAATTATACCCTTTATTACGTT TTGGATATGGCGCTTGGCTTTTGTGAGGAGTTTAGGTGAAGCCCAGAGGTTATTCTTAAGTCACATCTCCACTACTGTTATTCTTACTGATTGTCTGCAT GGGTTCCTGCTTTCTGCGAGTATTGTTTTCATTTTTCTTGGCGCCACTTCTCTAAGAGATTACTTCAGGCATTTAAGAGAGCTTGGAGGACAGGATGCTG AGAGAGAAGATGAAGGAGACAGAAACGGTGCCCGTGCTGCAAGACGACCACCAGGACAGGCTAATAGAAATGTTGCTGGTGAGGTAAATGCTGAAGATGC TGGTGGAGCACAAGGAATTGCTGGGGCTGGTCAAATAATCCGAAGGAATGCAGAGAATGTTGCTGCTCGATGGGAGATGCAGGCAGCTCGTCTCGAGGCT CATGTTGAACAGATGTTTGATGGTTTAGATGATGCTGATGGTGCAGAGGATGTGCCCTTTGATGAGCTCGTTGGCATGCAGGGTCCTGTTTTTCATTTAG TTGAAAATGCATTTACTGTTTTGGCTAGCAATATGATATTCCTCGGTGTTGTAATCTTTGTGCCATTTTCTCTGGGACGGATTATCCTGTACTACATATC ATGGCTTTTCTCTTCTGCAAGTGTTCCTGTGCTGTCAACAGTTATGCCACTTACAGATACTGCTCTCTCTTTAGCAAATATCACCTTGAAGAATGCATTA ACTGCTGTTGAAAATTTGACATCTGAAGGTGAAGATGGTGGTGGAGTTCTTGGTCAGGTTGCGGACATGTTGAATGTAAATGCCAGTGGACTAAATGAAG TCTCAAATAACATAAGCAGTTCACTTTCTGCAGATATCTTAAAAGGGGCAAGTGTTGGCACGTCACGGCTTTCTGATGTCACGACTCTTGCTATTGGATA CATGTTTATATTCTCTCTAGTCTTCTTCTATCTTGGTGGTGTTGCTTTAATTCGGTACACTAAGGGTGAACCTTTGACCATGGGGAGGTTTTACGGTATC GCTTCTATAGCAGAGACAATTCCATCCCTCTTCAGGCAGTTCTTGGCAGCAACGAGACATTTGATGACCATGATTAAGGTTGCCTTCCTTCTAGTTATTG AACTCGGGGTGTTCCCTTTGATGTGTGGATGGTGGCTGGATATTTGTACAATAAGGATGTTTGGAAAGTCTATGGCTCAAAGAGTTCAGTTCTTCTCAAT TTCTCCTTTAGCAAGCTCGTTAGTTCATTGGGTTGTAGGAATTGTTTACATGCTACAAATCAGCATCTTCGTGAGCCTTCTTCGTGGGGTTTTGCGCCAT GGTGTGTTGTATTTTCTTCGAGATCCAGCAGATCCTAACTACAACCCATTCCGTGATCTAATTGATGATCCTGTGCACAAGCATGCTCGCAGAGTTTTAC TGTCTGTTGCAGTTTATGGAAGTCTAATTGTGATGCTTGTATTCTTACCTGTTAAACTTGCTATGAGAATGGCACCTTCCATTTTTCCACTGGACATTTC GGTATCCGACCCATTTACTGAAATTCCAGCTGACATGCTTCTCTTTCAAATCTGCATCCCGTTTGCCATTGAGCATTTTAAGTTGCGGACCACAATCAAG TCCCTTCTCCGCTACTGGTTTACAGCAGTAGGCTGGGCACTTGGCTTAACAGATTTCTTACTGGCTGGAGCTGAGGACAATGGTGGTCAAGACAATGGAA ATGTGGAGCAAGGAAGGCAGGATAGACTACAGGCTGCACAACAAGGTGGACAAGACAGGGCCCTAGTGGCTCTTGCAGCTGCAGATGACCAAAACAGTTC CACTCTTGCAGCCGGAACTTCTGCAGAGGAGGATGAGATTGATGAGCAATCTGATTCAGACAGGTACAGCTTTGTTCTACGGATTGTCCTCTTGCTGGTG GTAGCATGGATGACTCTACTTATGTTCAACTCCACGTTGATAGTTGTTCCAATATCACTTGGGCGTGCACTTTTCAATGCCATTCCTCTTCTGCCAATAA CTCATGGCATCAAGTGCAATGATCTATATGCTTTTGTAATTGGAAGTTACGTCATTTGGACTGCTTTAGCTGGAGCAAGATACTCCATTGAGCAAATTAG AACAAAGAGGGCAACAGTTTTGTTTAGGCAAATCTGGAAGTGGTGCAGCATTGTTCTCAAGAGCTCGGCTCTATTGTCAATATGGATTTTTGTTATTCCA GTATTGATTGGGCTGCTCTTCGAGCTTTTGGTAATTGTGCCTATGCGGGTGCCTGTAGATGAAAGCCCTGTTTTCCTTCTGTATCAAGATTGGGCATTAG GGCTCATCTTTCTCAAGATATGGACTCGGCTGGTAATGTTGGACCAGATGATGCCGCTGGTGGATGAAAGTTGGAGAATAAAATTCGAAAGGGTGAGAGA AGATGGTTTCTCAAGGCTGCAAGGCCTTTGGGTCCTGCAGGAGATTGTTTTCCCAATAATAATGAAGCTGCTAACAGCCTTGTGTGTACCTTATGTCTTA TCAAGAGGAGTATTTCCTGTTCTTGGGTACCCATTAGCAGTAAACTCAGCAGTGTACCGATTTGCATGGCTGGGATGCCTCTGCTTCAGCCTGTTGTGCT TTTGTGGCAAGAGATTTCATGTCTGGTTCACCAACCTTCACAATTCCATTCGTGATGATCGCTATCTCATTGGTCGCAGGCTTCATAACTATGGAGAGTA TAAAGAGAAGCAGCAAAATGAGGCAGGGACTTCCTCAGAAGCACAGATTTCAAATTCTCAGGGCACGGGTTTGATTGGAGAAGTTGATGTAGGAGGAATA AGATTAAGACGTGCTATTCGAGATGAAGCTTAA
AA sequence Show only first row Show all	>Potri.009G099400.4 pacid=42771430 polypeptide=Potri.009G099400.4.p locus=Potri.009G099400 ID=Potri.009G099400.4.v4.1 annot-version=v4.1 MEIDSAVEQPPPQQPITSATATDGVNQTQSPSGSMGKEESDGVKTVSLLSAARFDDDEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLN HSNARQCEVCKHPFSFSPVYAENAPARLPFQEFVVGMTMKTCHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQRLFLSHISTTVILTDCLH GFLLSASIVFIFLGATSLRDYFRHLRELGGQDAEREDEGDRNGARAARRPPGQANRNVAGEVNAEDAGGAQGIAGAGQIIRRNAENVAARWEMQAARLEA HVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILYYISWLFSSASVPVLSTVMPLTDTALSLANITLKNAL TAVENLTSEGEDGGGVLGQVADMLNVNASGLNEVSNNISSSLSADILKGASVGTSRLSDVTTLAIGYMFIFSLVFFYLGGVALIRYTKGEPLTMGRFYGI ASIAETIPSLFRQFLAATRHLMTMIKVAFLLVIELGVFPLMCGWWLDICTIRMFGKSMAQRVQFFSISPLASSLVHWVVGIVYMLQISIFVSLLRGVLRH GVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIK SLLRYWFTAVGWALGLTDFLLAGAEDNGGQDNGNVEQGRQDRLQAAQQGGQDRALVALAAADDQNSSTLAAGTSAEEDEIDEQSDSDRYSFVLRIVLLLV VAWMTLLMFNSTLIVVPISLGRALFNAIPLLPITHGIKCNDLYAFVIGSYVIWTALAGARYSIEQIRTKRATVLFRQIWKWCSIVLKSSALLSIWIFVIP VLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDQMMPLVDESWRIKFERVREDGFSRLQGLWVLQEIVFPIIMKLLTALCVPYVL SRGVFPVLGYPLAVNSAVYRFAWLGCLCFSLLCFCGKRFHVWFTNLHNSIRDDRYLIGRRLHNYGEYKEKQQNEAGTSSEAQISNSQGTGLIGEVDVGGI RLRRAIRDEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34100			RING/U-box superfamily protein...		Potri.009G099400 [exp]	0	1
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Potri.017G032000 [exp]	1.00	0.8337
AT5G25270			Ubiquitin-like superfamily pro...		Potri.006G059700 [exp]	2.82	0.7778
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Potri.014G056700 [exp]	3.87	0.7566
AT3G03310		ATLCAT3	ARABIDOPSIS LECITHIN:CHOLESTER...		Potri.008G076300 [exp]	4.89	0.7597
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Potri.003G032300 [exp]	6.63	0.7331	ETR1.2
AT1G13570			F-box/RNI-like superfamily pro...		Potri.008G110400 [exp]	7.54	0.7624
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.008G108800 [exp]	12.24	0.7331
AT4G38690			PLC-like phosphodiesterases su...		Potri.009G131600 [exp]	15.09	0.7087
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Potri.017G002000 [exp]	19.44	0.7563	Pt-TEJ.2
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.005G230400 [exp]	20.19	0.7320

Compare expression of checked genes

Potri.009G099400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.