Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) AT3G19370 269 / 2e-78 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3) AT1G19835 241 / 1e-66 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 196 / 2e-51 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 179 / 3e-46 Plant protein of unknown function (DUF869) (.1) AT3G05270 115 / 2e-26 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G77580 105 / 7e-23 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 82 / 9e-16 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304200 [exp] 1404 / 0 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 419 / 5e-131 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.005G140300 [exp] 419 / 5e-131 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.002G024400 [exp] 241 / 3e-66 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 231 / 6e-63 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 122 / 1e-28 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G083400 [exp] 122 / 3e-28 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 117 / 5e-27 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 112 / 4e-25 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004994 [exp] 328 / 7e-97 AT2G23360 481 / 7e-154 Plant protein of unknown function (DUF869) (.1) Lus10019839 [exp] 304 / 8e-87 AT4G34100 1668 / 0.0 RING/U-box superfamily protein (.1.2) Lus10014076 [exp] 281 / 4e-79 AT4G34100 1575 / 0.0 RING/U-box superfamily protein (.1.2) Lus10024324 [exp] 221 / 6e-60 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 218 / 1e-58 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 218 / 1e-58 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 192 / 5e-53 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024325 [exp] 199 / 1e-52 AT1G19835 787 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10018164 [exp] 105 / 5e-23 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10029679 [exp] 103 / 2e-22 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [poplar] [flax] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Potri.009G099500.5 pacid=42770994 polypeptide=Potri.009G099500.5.p locus=Potri.009G099500 ID=Potri.009G099500.5.v4.1 annot-version=v4.1 ATGGACAACAAGACATGGCTTTGGAGGAAAAGATCTTCTGAAAAGACAATTGTGGCAACGAACAAATTTGGCATTTCTGTGAAAGGAATCGATGAAGAGA CGCAGAATATTCCGGCTGGGAATGGATTAGGACCAGTTAGACGAAATTTAAACGAAAAGTTAGCTTCTGTGCTTCTTGATTGTCATGCAAAAGATGATCC CGTGACAGAAAATGAAAAATCAGAACAAAGAGCTACTGCAGGCCAGGAAAAGACAGAAGCAGAAGTAGATTGCCTAAAGAAAGAACTGGATGGAGCTCCG AGTCAGGGAGTAGCTGCAAATGAAGAATTAAGTCACTCAGATGCCACATTAAAGAAATGCATGCAGCAACTGAACTCCTTCCGAGAAGAACACGAGCAAA AGATACACGATGCTGTCATGGAAGCAACAAGTGAATTTGAGAGGGCACAGAAAACTTTGGAAGGGAAGTTGATGGAGACAAGCAAAAGGCTTACAAATTT AGCCATTGAGAACACAAATTTGAGTAATGCCCTTTTACTCAAAGAGAAATTAGTTGAAGAGCTGCATAAACGTGCATCTCAGACCCTTGCAGAATTCAAT GCACTAATGGCTAGATTAGATTCCACAGAGAAAGAGAATGCTTTTCTGAAGTACGAGTTTCACATGCTTCAGAAGGAACATGAGGTTCGAAATGAGGAAC TGGAATATAACCGTCGGTCTTCTGATGCATCGCGAAGGCAACACTTGGAGAGTGTAAGTAAAGTCACGAAGCTAGAAGCAGAATGTCAGAGACTTCGCAC CCTAATGCGGAAAAGGCTGCCCGGTCCTGCTGCTTTCTCAAAGATCAAGAGTGAAGTCCAAATGCTGGGAAAGGAGCCGATGGAATTAAGAAGAAAACCG AACCTCACCAGAGATTTGGTACTCAGAGACCCCATTATGGAAATTTCTCCAGAAATTCCTGTAAAGAACATTGATTTCCTGATCGAGCAATTACGTGGTA AGGAAGAGGAGAATAAAGTTCTCAGAGAAATGATGACCAGAAAGAATGCTGAACTCCAATCTTCAAGAATCATGTTTTCACGAACTGCTTCAAGGTTATC TGAGGTCGAGGCTCAGGTTATGGAGCTTTCTGGAGACCAGAAATCCGTGGAGCTGACAATGCATAGCCCATCATCACGTGAACTCTTATCTCCAATTGCA GGTTCTGATGCTGGATCATGGGCTAATGCTCTAATCTCAGAACTGGAACATTTAAGAGATGGGAAACTCAAGAGTCCGTCAGGACATAAAGCCATTGAAG TTATGGACATGAGTTTAATGGATGATTTTGTTGAGATGGAGAAATTAGCTATGGTTTCAACACAAACACCTTCTGCAGGAGGGAATCGCCCTTCCTCAGC TGGCAAGGAACTAGTTCCCGTAGAACAAGAGAAACAAGAGATCCACATGAAAGATGATTCAACTGATAAGTCTTTCGACTGGCTTCAGGTTGTTCTGAAT GCAATATTCAAACAGCAGCGTATTTCAAAACGAAGTCTAACTGAACTCCTGGAGGACATTAATATTGCTTTAGGTTATATAAATCATCCAAATGTTTGCG AACCTAATACATCAGCATTCTCAAGGCTTCCTGTGGAGTGTGATATTAGCGGTTATATCACTTGGAAGTCTCCAAGTGAATCTTCGATTGTGGATTCACT GAATGAAACTTCCAGGCCCGACACCCCAGTGAAAGAAACAAGCAAACAACACGATCAATCTAATCTGACTGATCTACAAGAAGAGAATGATAGACTGAAA AATGAGCTGAATAATATGGAAGCCAGGCTGCATTCTGCAACTGATAAGTCGGAGGCTCTGATGATGAAGCTCCGGGAATCAGAACAAAGTGTTGAAAGGT TACAAGCAGAAGTGGAAATTTTGAAGGAATCAAAAGGAATGATTGAGGATCAAATTGAAAATCAGAAGTCAATCAATGAAGATCTTGATACTCAGCTTAC AGTTACCAAAGCTAAATTGAATGAGGTCTTCCACAAGTTCTCATCTCTGGAAGTTGAATTTGAGGACAAAAGTAACTGTTGTGAAGAATTAGAAGCAACT TGTCTTGAGCTTCAACTTCAGCTGGAAAGTGCTGCAAAGGAAACCCTGAGCTGTGGCATAAATGAAGAGGGAAAACAACCACAAGATGGCTGGGAGATCA AGGCAGCTTCTGTAAAGTTAGCAGAATGCCAAGAAACCATCCTTAATCTTGGAAAGCAACTGAAGGCTCTGGCTTCACCAAGAGAAGCAGCACTCTTTGA CAAGGTTTTCACTACTACTGGTGCCACTGCCGCTGCTACCAATATCAAGAACATGAACAGGCGCTTCTCCTTGCGTGATCAAATGATAGCTGAAGATAGA TCCAAAGCAATTATTCTCAGATCTCCAACTGAAGATGCACAAAAATCATCTCTTAACCACACAGATAACGGTAATGAATTGATCAGTCCTAATGCCCTGG TATGTGCCTCTGAAGCATATTTTGGACCAAAGCACAAATCCGGTAATGCTGCAGTTGGGGCTCTGGCTATTGTTCCTAGTAAAAAGCAAGGATTTGGTTT GCTGAGGAGCCTACTAATGAGAAGGAAGAAAGGGGCTAGCAAGAAGTCACGATCCTTGGTGAAGGTATGA
AA sequence Show only first row Show all	>Potri.009G099500.5 pacid=42770994 polypeptide=Potri.009G099500.5.p locus=Potri.009G099500 ID=Potri.009G099500.5.v4.1 annot-version=v4.1 MDNKTWLWRKRSSEKTIVATNKFGISVKGIDEETQNIPAGNGLGPVRRNLNEKLASVLLDCHAKDDPVTENEKSEQRATAGQEKTEAEVDCLKKELDGAP SQGVAANEELSHSDATLKKCMQQLNSFREEHEQKIHDAVMEATSEFERAQKTLEGKLMETSKRLTNLAIENTNLSNALLLKEKLVEELHKRASQTLAEFN ALMARLDSTEKENAFLKYEFHMLQKEHEVRNEELEYNRRSSDASRRQHLESVSKVTKLEAECQRLRTLMRKRLPGPAAFSKIKSEVQMLGKEPMELRRKP NLTRDLVLRDPIMEISPEIPVKNIDFLIEQLRGKEEENKVLREMMTRKNAELQSSRIMFSRTASRLSEVEAQVMELSGDQKSVELTMHSPSSRELLSPIA GSDAGSWANALISELEHLRDGKLKSPSGHKAIEVMDMSLMDDFVEMEKLAMVSTQTPSAGGNRPSSAGKELVPVEQEKQEIHMKDDSTDKSFDWLQVVLN AIFKQQRISKRSLTELLEDINIALGYINHPNVCEPNTSAFSRLPVECDISGYITWKSPSESSIVDSLNETSRPDTPVKETSKQHDQSNLTDLQEENDRLK NELNNMEARLHSATDKSEALMMKLRESEQSVERLQAEVEILKESKGMIEDQIENQKSINEDLDTQLTVTKAKLNEVFHKFSSLEVEFEDKSNCCEELEAT CLELQLQLESAAKETLSCGINEEGKQPQDGWEIKAASVKLAECQETILNLGKQLKALASPREAALFDKVFTTTGATAAATNIKNMNRRFSLRDQMIAEDR SKAIILRSPTEDAQKSSLNHTDNGNELISPNALVCASEAYFGPKHKSGNAAVGALAIVPSKKQGFGLLRSLLMRRKKGASKKSRSLVKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23360			Plant protein of unknown funct...		Potri.009G099500 [exp]	0	1
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.004G030600 [exp]	9.79	0.8146
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.003G157300 [exp]	9.89	0.8252
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.012G042100 [exp]	10.86	0.8215
AT4G16790			hydroxyproline-rich glycoprote...		Potri.001G155000 [exp]	20.00	0.8124
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.014G012200 [exp]	21.09	0.8106
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Potri.003G106400 [exp]	21.21	0.7730
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Potri.015G066000 [exp]	22.04	0.8034	HA2.2
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Potri.017G108000 [exp]	22.49	0.8009
AT4G39790			Protein of unknown function (D...		Potri.007G090300 [exp]	25.98	0.7776
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G103100 [exp]	33.46	0.8011

Compare expression of checked genes

Potri.009G099500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.