Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34090 471 / 6e-168 unknown protein AT2G23370 390 / 6e-136 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045900 [exp] 447 / 1e-158 AT4G34090 405 / 5e-142 unknown protein Potri.001G304401 [exp] 198 / 7e-64 AT4G34090 144 / 2e-43 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041575 [exp] 428 / 1e-150 AT4G34090 429 / 2e-151 unknown protein Lus10004995 [exp] 201 / 7e-63 AT4G34090 206 / 3e-65 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G099600.1 pacid=42772546 polypeptide=Potri.009G099600.1.p locus=Potri.009G099600 ID=Potri.009G099600.1.v4.1 annot-version=v4.1 ATGAAGATAGGAGTGCTGGGTGTGGCGCACAGAGTCCCTTCTACTACTACTCTCCCTCTTCGCCAAGTCAGAGCCAGGGTTAGATGTTTTTCCTCCTCTG GCCACATATCATTCATAGAGGAAGTAGCTGCTACTCAACCTCCTCAGCATCTCCATTACTTGCTCAAAATGCTTCAAACTAGAGGTGAAACCATCATTTC CCCAGGATCTAAACAAGGGTTGATTCCACTTGTTATTCCTCTATCGGAGAATCTGTCAGGTTCCGTAACTGCACTGCTGCGCTGGCCAACAGCCCCACCT GGAATGGAGATGCCGGTTGTGGATGTTCGCAAGCATGGGGTGTGGCTTTTAGCCAAGAATGTAGATCAATATATGCACAGAATTCTGGTTGAGGAAGATG CCAGCAATTTCAACGAAAGTGATGGTGAACTCTTTCATGCTGCTTCAGATGTGGGTGAGAAACTTTACAGAAGGGGTGATTTTGCTGAATCTCAGATTGC AAACCTCGATGGCTATCTTCTTAAAGAGGTTGGGCTGTTCCCAGATGTCTTAGAGCGTAAAGTAGCTCGCCATTTTGAGCAAGGGGATCATGTTTCGGCA ATGGTGACAGGGGAATTCTATACAAAAAAAGATCTATTTCCAGGATTTGGAAGGCCCTTTGTATTCTATGCAGAGATTTTGAAGAAAGTTGGACGTACAT CAGAAGCTAAAGATGCTGCAAGGGTTGCTTTAAAATCACCATGGTGGACCTTAGGTTGTGCATATCAGGAAGTGGCAGGCATTGCACAGTGGGAGGATGA GCAAATTGAATACATTAAGGAGAGGGTGAGTGAAGAGGGTAGGCAGGAGGATTTGAAGAAGGGAAAGGCGGCTGCTCAGATAGCATTGGATGAGGCTGCT TTCTTGTTGGATTTAGCTTCTATTAAAGGAACCTGGGATAATGTTTTGGAGCGTATTGCTGAATGTTATAGGGAGGCTGGATTTGATGAAATTGCAAGAT TCATTTTGTACAAAGATTAA
AA sequence Show only first row Show all	>Potri.009G099600.1 pacid=42772546 polypeptide=Potri.009G099600.1.p locus=Potri.009G099600 ID=Potri.009G099600.1.v4.1 annot-version=v4.1 MKIGVLGVAHRVPSTTTLPLRQVRARVRCFSSSGHISFIEEVAATQPPQHLHYLLKMLQTRGETIISPGSKQGLIPLVIPLSENLSGSVTALLRWPTAPP GMEMPVVDVRKHGVWLLAKNVDQYMHRILVEEDASNFNESDGELFHAASDVGEKLYRRGDFAESQIANLDGYLLKEVGLFPDVLERKVARHFEQGDHVSA MVTGEFYTKKDLFPGFGRPFVFYAEILKKVGRTSEAKDAARVALKSPWWTLGCAYQEVAGIAQWEDEQIEYIKERVSEEGRQEDLKKGKAAAQIALDEAA FLLDLASIKGTWDNVLERIAECYREAGFDEIARFILYKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34090			unknown protein		Potri.009G099600 [exp]	0	1
AT5G19500			Tryptophan/tyrosine permease (...		Potri.001G224950 [exp]	2.23	0.9566
AT1G53250			unknown protein		Potri.001G393700 [exp]	2.44	0.9399
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Potri.002G206300 [exp]	3.16	0.9300
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.001G351400 [exp]	4.47	0.9466
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Potri.004G177400 [exp]	4.69	0.9166
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.003G140800 [exp]	8.12	0.9286
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Potri.005G091600 [exp]	9.00	0.9232
AT5G19010		ATMPK16	mitogen-activated protein kina...		Potri.010G029700 [exp]	9.64	0.8528	Pt-ATMPK16.1
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	10.00	0.9212
AT3G59780			Rhodanese/Cell cycle control p...		Potri.013G128300 [exp]	10.24	0.9247

Compare expression of checked genes

Potri.009G099600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.