Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49780 515 / 0 PUB26 plant U-box 26 (.1) AT3G19380 509 / 2e-180 PUB25 plant U-box 25 (.1) AT2G35930 190 / 5e-56 PUB23 plant U-box 23 (.1) AT5G37490 166 / 1e-46 ARM repeat superfamily protein (.1) AT1G66160 142 / 7e-38 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT3G52450 128 / 7e-33 PUB22 plant U-box 22 (.1) AT3G46510 130 / 1e-32 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G23030 128 / 5e-32 PUB11 ARM repeat superfamily protein (.1) AT5G65920 124 / 3e-31 ARM repeat superfamily protein (.1) AT3G49810 119 / 1e-29 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140100 [exp] 729 / 0 AT1G49780 517 / 0.0 plant U-box 26 (.1) Potri.001G216100 [exp] 184 / 1e-53 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.009G016200 [exp] 178 / 1e-51 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.017G135000 [exp] 179 / 2e-51 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1) Potri.016G069400 [exp] 178 / 2e-51 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.008G137700 [exp] 177 / 8e-51 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.010G103100 [exp] 175 / 3e-50 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) Potri.006G202600 [exp] 174 / 4e-50 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.004G083900 [exp] 175 / 6e-50 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014073 [exp] 335 / 9e-114 AT1G49780 281 / 2e-92 plant U-box 26 (.1) Lus10019842 [exp] 309 / 5e-105 AT1G49780 276 / 3e-92 plant U-box 26 (.1) Lus10001079 [exp] 188 / 9e-55 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10021267 [exp] 169 / 6e-48 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10013584 [exp] 166 / 5e-47 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10016166 [exp] 159 / 4e-44 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10029393 [exp] 157 / 1e-43 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10016565 [exp] 145 / 6e-38 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040124 [exp] 135 / 2e-37 AT1G66160 154 / 6e-45 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) Lus10040834 [exp] 143 / 5e-37 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.009G100200.1 pacid=42772418 polypeptide=Potri.009G100200.1.p locus=Potri.009G100200 ID=Potri.009G100200.1.v4.1 annot-version=v4.1 ATGCCTGGAAGCTTGGAGCCTTTAGATTTAACAGTTCAGATTCCATACCATTTTCGGTGTCCGATCTCTCTTGAACTAATGTGTGACCCAGTCACCGTTA GCACAGGTCAGACTTACGATCGTTCCAGCATAGAATCATGGGTAGCCACCGGTAATACTACCTGTCCTGTTACCCGAGCCCCACTCACCGACTTCACTTT AATCCCAAACCACACCCTTCGCCGTTTGATTCAAGATTGGTGTGTTGCAAATCGTGCTTTCGGCGTTGAACGAATTCCAACCCCGAAACAGCCTGCCGAA CCGAGTTTAGTTCGTTCCTTGTTAAACCAAGCAGCTTCCGCGTCAAATCCAACTCACTCTCGCCTCTCTGCTCTCCGCCGACTCAGAGGACTCGCTCGAG ATTCCGATAAGAACCGCTCTGTCATTTCCTCTCATAACGTTCGTGAAGTTCTTGTCAACCTCGTGTTTTCAACCTCTCAGTCGTCGGACTTGAGCCACGA GTCACTCGCGATCCTGGTTCTGTTTCCGCTCACTGAGTTCGACTGTGTGGGGATATCTTCAGAACCGGAGCGGATCAGTTATTTAGCTAATTTACTATTC CATTCATCAATCGAAGTCCGAGTCAACTCAGCTGCACTCATTGAAAATGTTATTGCAGGAACAAGATCATCAGATCTTCGACTTCAAATTAGCAACACAG AGATTATCTTCGAAGGAGTGATAGAGATTTTAAAAAATCCTTTATCATCCCCTCGAGCGCTTAAAATTGGGATAAAAGCGCTCTTCGCTTTATGTCTAGT TAAACAAACAAGGCATAAAGCGGTCACCGCCGGAGCGGCGGAGACATTAATCGACAGACTGGCAGATTTTGATAAATGTGATGCAGAAAGAGCCCTGGCT ACAATAGAATTACTTTGCAGAATACAAGTTGGTTGCGCAGCATTTGCAGCGCACGCGCTGACTGTGCCGTTGTTAGTCAAGACTATCCTGAAGATATCGG ATAGAGCGACGGAGTACGCGGCGGGAGCGTTGCTGGCGCTGTGTTCAGCGTCGGAGCTGAGTCAGAAGGAGGCGGTTTGTGCAGGGATATTGACGCAGTT GTTGCTGTTAGTACAGAGTGATTGTACTGATAGGGCTAAGAGGAAGGCGCAGATGTTGCTGAAGTTGTTAAGGGATGCATGGCCTGAGGATTCTGTCGGC AATTCTGATGATTTTCTTTGCAGTGAAGTGGTGCCGTTTTGA
AA sequence Show only first row Show all	>Potri.009G100200.1 pacid=42772418 polypeptide=Potri.009G100200.1.p locus=Potri.009G100200 ID=Potri.009G100200.1.v4.1 annot-version=v4.1 MPGSLEPLDLTVQIPYHFRCPISLELMCDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRAFGVERIPTPKQPAE PSLVRSLLNQAASASNPTHSRLSALRRLRGLARDSDKNRSVISSHNVREVLVNLVFSTSQSSDLSHESLAILVLFPLTEFDCVGISSEPERISYLANLLF HSSIEVRVNSAALIENVIAGTRSSDLRLQISNTEIIFEGVIEILKNPLSSPRALKIGIKALFALCLVKQTRHKAVTAGAAETLIDRLADFDKCDAERALA TIELLCRIQVGCAAFAAHALTVPLLVKTILKISDRATEYAAGALLALCSASELSQKEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDAWPEDSVG NSDDFLCSEVVPF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49780		PUB26	plant U-box 26 (.1)		Potri.009G100200 [exp]	0	1
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.017G013700 [exp]	1.00	0.7456	ERF46
AT4G20880			ethylene-responsive nuclear pr...		Potri.011G162400 [exp]	11.66	0.6944
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Potri.012G007500 [exp]	12.84	0.6838
AT1G28280			VQ motif-containing protein (....		Potri.011G053700 [exp]	14.07	0.6011
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.017G045400 [exp]	19.20	0.6518
AT1G69050			unknown protein		Potri.010G138700 [exp]	19.62	0.6412
AT5G60800			Heavy metal transport/detoxifi...		Potri.004G214700 [exp]	26.49	0.6061
AT3G14470			NB-ARC domain-containing disea...		Potri.001G025400 [exp]	27.60	0.6563
AT1G20100			unknown protein		Potri.005G242400 [exp]	28.12	0.6522
AT4G17490	AP2_ERF	ERF-6-6, ATERF6	ethylene responsive element bi...		Potri.001G154200 [exp]	28.28	0.6639	Pt-ERF5.2,ERF4

Compare expression of checked genes

Potri.009G100200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.