Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19300 773 / 0 Protein kinase superfamily protein (.1) AT1G49730 760 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G20650 222 / 5e-66 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G46350 233 / 9e-66 Leucine-rich repeat protein kinase family protein (.1) AT3G58690 221 / 3e-65 Protein kinase superfamily protein (.1) AT4G00330 220 / 4e-65 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT5G54590 221 / 6e-65 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT1G49100 228 / 4e-64 Leucine-rich repeat protein kinase family protein (.1) AT5G15730 219 / 4e-64 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT1G76370 216 / 1e-63 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140301 [exp] 1093 / 0 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.001G048500 [exp] 238 / 5e-71 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.003G179500 [exp] 225 / 5e-67 AT2G25220 424 / 2e-147 Protein kinase superfamily protein (.1.2) Potri.002G009300 [exp] 222 / 4e-66 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.001G467000 [exp] 233 / 5e-66 AT1G30570 1090 / 0.0 hercules receptor kinase 2 (.1) Potri.006G114400 [exp] 233 / 2e-65 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G143100 [exp] 220 / 4e-65 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.017G101400 [exp] 219 / 1e-64 AT5G15730 549 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.016G084900 [exp] 229 / 3e-64 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014071 [exp] 890 / 0 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10019844 [exp] 878 / 0 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10002328 [exp] 229 / 2e-68 AT4G32000 436 / 6e-152 Protein kinase superfamily protein (.1.2) Lus10026091 [exp] 227 / 5e-67 AT1G80640 435 / 5e-151 Protein kinase superfamily protein (.1.2) Lus10043083 [exp] 225 / 2e-66 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10021003 [exp] 223 / 2e-65 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032672 [exp] 219 / 2e-64 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10030741 [exp] 217 / 7e-64 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10008491 [exp] 217 / 1e-63 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10015057 [exp] 227 / 2e-63 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G100400.3 pacid=42772405 polypeptide=Potri.009G100400.3.p locus=Potri.009G100400 ID=Potri.009G100400.3.v4.1 annot-version=v4.1 ATGGTGGTGTATAGACATGCCTTGTTGGTGTTGGGTTTACTTGCATTTATTGCAAAGCAGCTGCCTTCAACGACGGCAGATTGCCCCTTGGATTTGAGTG GATCAAACTTTACCTTAGCAGCCGCTGTGTGCTCCAATAAAGATAAAAGAGGACAATGTTGCCGCTATATTAATGCGTTTGTAGCAGTTTCCATTGCTCG CTATGCAAATACAACTAGCAACTTAGGGGTTGCCTCGAATGTATCTGATATATGTCTTCGCTCCATTTCTCAAACCATGCAACTGTATGGAGTTCCAAGT AATGCAACAATTTTTTGTGGGTTTGGGACGAAAATTCCAGTGAATTATGAGTGCGGGGGTCGAACAACTATCACTCAGATGTTGGAGTCTCCAAAATTTG TGAGTGTCGCACAAAATTGCAGACTGCCACTTTCATTAAAAAGTGATTGCAAGAGGTGTTTAAATGCTGGCATTATATACCTTCATCATCTGGTGGGAAC AGATAATAATGTGACATTGAGTACCTGCCGTGATGCAGCTTTCACTGCCCTTGCAAGCCAATTTGATGATGCTTCGGCTGTTGAAATTGCAAGCTGTTTC TTCGGAGTTCAAGGGCTCAACACCCCTTCAGAGCCACCTCCATCTTCAGTCACTCCTGAAGCCCCTCCAAGTCCATTGACAGCTGCTGGTCCCAGCCAAG TTATGTTGGGACTGCCCTTAAAATCAACTCACCACCCATACCATCTGACATTAGTTCCAATTGTTGGCATTGCGGTCACAACAGTTGCCTTTGTGATGCT GATAGTCTTGATAGTTCTTATTCGTAGGAAAAGCAGAGAACTAGAGGAATCTGAGAATATAGATAAGACCTTTCCAAGATCCATCCCTCCTCCTAGGCCT ACACGGAAATTTCAAGAAGGGCCTGCGTCAATGTTACGAAAATTCAGCTATAAGGAGACAATGAAGGCAACGGATAACTTCAACACAATCGTTGGACAGG GAGGATTTGGAACTGTATACAAAGCTGAATTTAGTGATGGCTTAGTGGCAGCAGTGAAGAGGATGAACAAGGTTTCAGAGCAGGTAGAAGAGGAGTTCTG CAGAGAGATAGAACTACTTGCTAGGTTGCACCACCGCCATCTTGTTGCTCTAAGAGGCTTTTGCATAAAAAAGAATGAGAGGTTCCTCATGTACGAGTAT ATGGCAAATGGAAGCTTAAAGGATCATCTTCATTCCTCTGGAAGTCCTCTGAGTTGGCAGACCAGAATGCAGATTGCTATTGACGTGGCTAATGCTTTGG AGTATCTCCACTTTTATTGTGATCCACCTCTGTGCCACAGGGACATAAAATCGAGCAACATTTTACTAGATGAAAATTTTGTTGCTAAGGTTGCAGATTT TGGCCTTGCCCATGCTTCGAAGGATGGTTCTATATGCTTTGAACCGGTAAATACCGATATCCGTGGAACTCCAGGTTACATGGATCCTGAGTATGTGGTC ACTCAAGAGCTTACCGAGAAAAGTGATATATATAGCTATGGTGTGGTACTGCTGGAGATAGTGACTGCAAGAAGAGCAATACAGGAGAGCAGGAATTTGG TGGAGTGGTCTCAAATATTCATGGCATCAGATTTAAGACTACCTGAGCTAGTGGATCCATGCATCAGGGATTCCTTTGACATGGACCAGCTTCAGACTAT TGTGACTATTGTTAGATGGTGCACACAGAGGGAAGGCCGGGCAAGGCCTTCGATCAAACAAGTCCTTAGACTTTTGTATGAGAGTTCAGACCCAATGCAT AGTGGGTTTTTGCGGGCCGTGGAAGATGAAGAGTGTGAAGGAAGTGAAGGACGAGGAAGAACGAGCAGGGGAAAATCACACAAGAGTGATGCTATTTTTC ACAGTGGGGATGGAAGATACCTTGCTTCGTCTTCAAGCACATCGAGGTCGTATTGTAGTAGAAGCTTTTTACTCGAAACTGGCTCTCCACAATCTCCCTC CAATATTCTCTCTGTTTGA
AA sequence Show only first row Show all	>Potri.009G100400.3 pacid=42772405 polypeptide=Potri.009G100400.3.p locus=Potri.009G100400 ID=Potri.009G100400.3.v4.1 annot-version=v4.1 MVVYRHALLVLGLLAFIAKQLPSTTADCPLDLSGSNFTLAAAVCSNKDKRGQCCRYINAFVAVSIARYANTTSNLGVASNVSDICLRSISQTMQLYGVPS NATIFCGFGTKIPVNYECGGRTTITQMLESPKFVSVAQNCRLPLSLKSDCKRCLNAGIIYLHHLVGTDNNVTLSTCRDAAFTALASQFDDASAVEIASCF FGVQGLNTPSEPPPSSVTPEAPPSPLTAAGPSQVMLGLPLKSTHHPYHLTLVPIVGIAVTTVAFVMLIVLIVLIRRKSRELEESENIDKTFPRSIPPPRP TRKFQEGPASMLRKFSYKETMKATDNFNTIVGQGGFGTVYKAEFSDGLVAAVKRMNKVSEQVEEEFCREIELLARLHHRHLVALRGFCIKKNERFLMYEY MANGSLKDHLHSSGSPLSWQTRMQIAIDVANALEYLHFYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKDGSICFEPVNTDIRGTPGYMDPEYVV TQELTEKSDIYSYGVVLLEIVTARRAIQESRNLVEWSQIFMASDLRLPELVDPCIRDSFDMDQLQTIVTIVRWCTQREGRARPSIKQVLRLLYESSDPMH SGFLRAVEDEECEGSEGRGRTSRGKSHKSDAIFHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPSNILSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19300			Protein kinase superfamily pro...		Potri.009G100400 [exp]	0	1
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.014G070000 [exp]	1.41	0.8110
AT2G15320			Leucine-rich repeat (LRR) fami...		Potri.001G301400 [exp]	4.79	0.7241
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.002G114200 [exp]	8.36	0.7879	Pt-ATCSLC12.1
AT1G15080		ATLPP2, LPP2, A...	PHOSPHATIDIC ACID PHOSPHATASE ...		Potri.010G119300 [exp]	8.77	0.7538	Pt-PAP2.2
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Potri.002G113066 [exp]	9.89	0.7383
AT3G30300			O-fucosyltransferase family pr...		Potri.017G101600 [exp]	14.83	0.6969
AT1G19490	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.006G114600 [exp]	18.97	0.7117
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Potri.006G241500 [exp]	18.97	0.6896
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Potri.008G111600 [exp]	19.97	0.6908
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Potri.002G181800 [exp]	20.44	0.7451

Compare expression of checked genes

Potri.009G100400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.