Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34980 541 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT5G67360 535 / 3e-180 ARA12 Subtilase family protein (.1) AT2G05920 519 / 5e-174 Subtilase family protein (.1) AT3G14240 512 / 4e-171 Subtilase family protein (.1) AT5G51750 508 / 3e-169 ATSBT1.3 subtilase 1.3 (.1) AT3G14067 500 / 2e-166 Subtilase family protein (.1) AT1G01900 486 / 3e-161 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G04110 482 / 2e-159 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67090 456 / 9e-150 Subtilisin-like serine endopeptidase family protein (.1) AT1G20160 431 / 7e-140 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026600 [exp] 697 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.007G045100 [exp] 605 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026700 [exp] 578 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G124500 [exp] 575 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 564 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.001G163600 [exp] 551 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 545 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 536 / 2e-180 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.006G141200 [exp] 534 / 1e-179 AT2G05920 1103 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027891 [exp] 984 / 0 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10002392 [exp] 979 / 0 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10002393 [exp] 876 / 0 AT5G67360 450 / 9e-148 Subtilase family protein (.1) Lus10018721 [exp] 628 / 0 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10024814 [exp] 605 / 0 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10009748 [exp] 563 / 0 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10001130 [exp] 562 / 0 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10024815 [exp] 546 / 0 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10033431 [exp] 528 / 3e-177 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 525 / 4e-176 AT5G67360 990 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.009G100500.1 pacid=42771468 polypeptide=Potri.009G100500.1.p locus=Potri.009G100500 ID=Potri.009G100500.1.v4.1 annot-version=v4.1 ATGATCCTAACAATGGGTCATTTTACTCCTCCCAAACTTCTCTTTGCTCTCTGCCTTCTTTTCCCAATTGCCGCATCATTTTCCACATCAAATGACCGAA AAACCTACATTATCCATATGGACAAGACCGGGATGCCATCTACCTTCTCCACCCAGCATGATTGGTACGTGTCAACACTGTCATCCCTGTCATCGCCAGA TGACATTCCGCCTATCCATCTCTACTCTTACAAGCATGTCATGGACGGGTTCAGTGCTGTGTTGTCCCAAACCCACCTTGACCAACTGGAGAGTTTGCCT GGTCATGTTGCTACCTTCCCAGAATCAATAGGCCATCTCCACACCACCCATACCCCAAAGTTTCTGGGCCTAAACAAACGTGCTGGAGCATGGCCAGCTG GCAAGTTTGGTGATGATGTGATTATTGGTGTTCTTGATACTGGAATTTGGCCTGAAAGTGAGAGCTTCAATGATAAAAACATGCCGCCAGTTCCGCAGCG ATGGCGTGGCATCTGCGAAACAGGAACAGAATTTAACACTTCTCATTGCAACAAAAAACTTATTGGTGCACGCAAGTTCAGCCAAGGCATGAAGCAAGTT GGGTTGAATATATCAAGTACAGATGACTATGATTCTCCAAGGGATTACATGGGCCACGGAAGCCACACATCTTCAACAGCAGGTGGAAGTCCGGTGCAAC ATGCTGATTATTTCGGTTATGCAAAAGGGACAGCAACAGGAATGGCACCATTGGCCAGAATTGCCATGTACAAGGTGATTTTCTATAGTGGCGATAGTGA CGGTTATGATGCTGCAGCAACAGATACACTTGCTGGCATGGATCAAGCCATAGAAGATGGTGTGGACATCATGTCATTGTCTTTGGGATTCTTTGAGACA CCATTCTATGAGAATCCAATAGCCATTGGAGCATTTGCAGCCTTGAAGAAAGGGATATTTGTTACATGTTCTGCTGGAAATTCAGGGCCTCATGGATACA CCATGTTCAATGGAGCTCCTTGGCTCACCACCATTGGTGCCGGAACCATTGACCGACAGTTTGGAGCTGAAGTCACACTGGGAAATGGCTCAATTATCGT CACTGGAACATCTATTTATCCTGAGAATTTGTTTATTTCCCGAGTTCCTGTATACTTCGGACTTGGAAATCGAAGCAAAGAAGTTTGTGATTGGAACTCC TTGGACCCCAAAGATGTTGCAGGCAAGTTCCTCTTCTGTGACTATGATGATGAGTCATCACAGTTTCGACAGATGTCTGAAAATGACCGATATGGGCCAG ACATTGCTGGAGCTACTGGGGCTATCTTCAGTGAAGACGATGCAGAATTTCTCCACCCAGACTACTTCTACATGCCGTTTGTGATAGTGAGCACAAAAGA TGGAAACTTGCTCAAGAACTATATCATGAATACCACAAACGCAACAGTTAGTGTAAAGTTCGGGTTAACATTGCTAGGTACTAAGCCAGCTCCGAAAGTG GCATATTTTTCTTCTCGAGGACCTGATCGAAGATCCCCGTGGACTCTGAAACCTGACATTCTGGCTCCTGGTTATCATATTCTGGCTGCTTGGGTTCCTA ATAGAGGATTTGCACCAATTCGTGAAGACGATTATTTGCTCACAGATTACGCTCTTGTTTCTGGCACATCAATGTCATGCCCCCATGTAGCTGGGATAGC TGCACTGCTTAAAGCTGCCCACCGTGATTGGAGTCCTGCTGCCATCCGATCAGCACTGATGACAACTGCTGATGTCATGGACAACGCAGATGGTAGAATC ATTGATATGACCACTGAAGTTGCTGGGACACCCCTTGATTTTGGAGCGGGGCATGTCAATCCCAACAAAGCAATGGACCCTGGCCTAGTGTACGATATAG TGGCAGAGGATTACATTAACTACCTGTGTGCGATGAATTATACAAGCCAACAGGTTCAAATCATCACAGGGACTTCAAATTTTACTTGTCAATATGCTAG CCTGGATCTTAATTATCCTTCTTTCCTTGTTCTCTTGAACAACACTAATACGAGCACCACTACCTTCAAGAGGGTGTTGACAAATGTAGCAGATAATAGC TCTGTCTATCGTGCGGTGATCTCAGCTCCCCAGGGTATGAAAGCTCTAGTCCAACCAACAACACTTATATTTTCAGGAAAAAACAGCAAAGCTGAGTTTA ATATGACCGTGGAGATCGATTTGGAAGCTGCTAGTGTTACTCCACAGAGCGATTATTTTGGGAATTACGGCTTTTTGAGCTGGTATGAGGTCAATGGAAG ACATGTCGTTAGGAGTCCCGTTGTCTCTGCAATTGCATCCCCTAAGACTTGA
AA sequence Show only first row Show all	>Potri.009G100500.1 pacid=42771468 polypeptide=Potri.009G100500.1.p locus=Potri.009G100500 ID=Potri.009G100500.1.v4.1 annot-version=v4.1 MILTMGHFTPPKLLFALCLLFPIAASFSTSNDRKTYIIHMDKTGMPSTFSTQHDWYVSTLSSLSSPDDIPPIHLYSYKHVMDGFSAVLSQTHLDQLESLP GHVATFPESIGHLHTTHTPKFLGLNKRAGAWPAGKFGDDVIIGVLDTGIWPESESFNDKNMPPVPQRWRGICETGTEFNTSHCNKKLIGARKFSQGMKQV GLNISSTDDYDSPRDYMGHGSHTSSTAGGSPVQHADYFGYAKGTATGMAPLARIAMYKVIFYSGDSDGYDAAATDTLAGMDQAIEDGVDIMSLSLGFFET PFYENPIAIGAFAALKKGIFVTCSAGNSGPHGYTMFNGAPWLTTIGAGTIDRQFGAEVTLGNGSIIVTGTSIYPENLFISRVPVYFGLGNRSKEVCDWNS LDPKDVAGKFLFCDYDDESSQFRQMSENDRYGPDIAGATGAIFSEDDAEFLHPDYFYMPFVIVSTKDGNLLKNYIMNTTNATVSVKFGLTLLGTKPAPKV AYFSSRGPDRRSPWTLKPDILAPGYHILAAWVPNRGFAPIREDDYLLTDYALVSGTSMSCPHVAGIAALLKAAHRDWSPAAIRSALMTTADVMDNADGRI IDMTTEVAGTPLDFGAGHVNPNKAMDPGLVYDIVAEDYINYLCAMNYTSQQVQIITGTSNFTCQYASLDLNYPSFLVLLNNTNTSTTTFKRVLTNVADNS SVYRAVISAPQGMKALVQPTTLIFSGKNSKAEFNMTVEIDLEAASVTPQSDYFGNYGFLSWYEVNGRHVVRSPVVSAIASPKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34980		SLP2	subtilisin-like serine proteas...		Potri.009G100500 [exp]	0	1
					Potri.009G114800 [exp]	2.23	0.9184
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.016G058500 [exp]	5.47	0.8305
					Potri.019G014354 [exp]	7.14	0.9016
					Potri.001G386950 [exp]	9.21	0.8407
AT1G03220			Eukaryotic aspartyl protease f...		Potri.013G070325 [exp]	10.29	0.9055
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Potri.006G186600 [exp]	11.35	0.8146
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G027400 [exp]	15.00	0.8883
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.002G134500 [exp]	20.39	0.8760	CYP721.5
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.005G224100 [exp]	20.66	0.8861
AT1G14930			Polyketide cyclase/dehydrase a...		Potri.008G131200 [exp]	23.21	0.8531	MLP.3

Compare expression of checked genes

Potri.009G100500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.