Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15560 528 / 0 Putative endonuclease or glycosyl hydrolase (.1) AT3G62210 122 / 2e-31 EDA32 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) AT3G62200 127 / 4e-31 Putative endonuclease or glycosyl hydrolase (.1) AT5G61190 117 / 2e-27 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1) AT5G61180 108 / 7e-26 Putative endonuclease or glycosyl hydrolase (.1) AT5G09840 107 / 3e-24 Putative endonuclease or glycosyl hydrolase (.1) AT5G64710 105 / 1e-23 Putative endonuclease or glycosyl hydrolase (.1.2) AT3G61028 96 / 3e-22 Putative endonuclease or glycosyl hydrolase (.1.2) AT3G60940 87 / 4e-19 Putative endonuclease or glycosyl hydrolase (.1) AT4G30760 60 / 3e-10 Putative endonuclease or glycosyl hydrolase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140400 [exp] 922 / 0 AT2G15560 545 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.001G307700 [exp] 120 / 2e-28 AT5G09840 588 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003301 [exp] 118 / 2e-28 AT3G62200 276 / 2e-85 Putative endonuclease or glycosyl hydrolase (.1) Potri.005G003800 [exp] 115 / 6e-27 AT3G62200 465 / 2e-156 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003000 [exp] 115 / 7e-27 AT3G62210 250 / 9e-78 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003100 [exp] 113 / 8e-27 AT3G62200 280 / 1e-87 Putative endonuclease or glycosyl hydrolase (.1) Potri.019G004000 [exp] 108 / 1e-24 AT5G09840 406 / 2e-126 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003200 [exp] 103 / 4e-23 AT3G62200 258 / 8e-76 Putative endonuclease or glycosyl hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019845 [exp] 647 / 0 AT2G15560 488 / 2e-169 Putative endonuclease or glycosyl hydrolase (.1) Lus10009982 [exp] 115 / 8e-27 AT3G62200 429 / 9e-142 Putative endonuclease or glycosyl hydrolase (.1) Lus10020866 [exp] 109 / 8e-25 AT5G09840 565 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10033511 [exp] 106 / 8e-24 AT5G09840 561 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10038041 [exp] 0 / 1 AT3G62200 179 / 3e-49 Putative endonuclease or glycosyl hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF01936 [poplar] [flax] NYN NYN domain CL0123 [poplar] [flax] HTH PF12872 [poplar] [flax] OST-HTH OST-HTH/LOTUS domain
Representative CDS sequence Show only first row Show all	>Potri.009G100600.1 pacid=42771008 polypeptide=Potri.009G100600.1.p locus=Potri.009G100600 ID=Potri.009G100600.1.v4.1 annot-version=v4.1 ATGGAAAATGCAAACCCATCGGCATCAATGCTTCCCTCGGATTCTCCTGAACAGATGGGAATCCATATGGCAGATTCAAACATGCAAGCTACTCAGCCTT CTGTGAACCAGCAAATTCGACCCTCTTTGGATGGTCCTGTAGCTATCCTTTGGGATATTGAGAACTGTCCTGTCCCTAGTGATGTCCGCTCTGAAGATGT GGCTGGCAATATCAGAATGGCTTTGCAGGTGCACCCTGTAATTAAAGGAGCTGTAATGATGTTTTCTGCATATGGAGATTTTAACTCCTTCCCCAGACGA CTGAGAGAAGGCTGCCAGAGAACGGGTGTTAAACTAATTGATGTTCCAAATGGTAGAAAGGATGCTGCTGACAAGGCTATTTTGGTCGACATGTTTCTCT TTGCTCTTGACAACCCCCCACCTTCCTCCATCATGCTTATCTCTGGGGATGTGGATTTCTCTCCAGCACTTCACATACTTGGTCAACGTGGATATACTGT GATTCTTGTTATCCCTTCCGGGGTTGGTGTTTCATCTGCCCTGTGCAACGCAGGCAAGTTTGTTTGGGACTGGCCTAGTGTGGCCCGTGGGGAAGGTTTT ATACCCCCCTTGAAGACATTATTGCCTGCCCATCTAGGACCAGCTGACATGGCTGGGTATTCCATGGGGTGCCGTATAAATGACAGCCATGATGGCCAGA ATGAAGAAGAGGCAATTGTATACAGAGGGCTCGCGCAAAGCTATTACAACTTGAGAGATTTCTCTATAGTGACACGTTCTTTATCTGAATACAACAGTAG TTCTTTGATGAGTCTGCCTTGTTTCCCCACTAGTTCAAGGTCACAGAGTCTCCCATCTGGTCTGAAAGAAGTTTCAGCAGGTCCTGCTTCTTATGATGAT TATTATTCTACTATGTGGGTACAGCCTGGGGGCATAAATAGTCTGAAAGCTCAGCTAGTGAAGTTGCTTGAAATTTCAGGAGGATGTTTGCCTCTTACCC GAGTTCCTCCTGAGTACCAGAAGATGTATGGACGGCCTCTTTGTGTTTCAGAGTATGGGGCATTGAAGCTTGTTAATCTTTTCAAGAAAATGGGTGATGC AATGGCAATAGATGGAAAGGCTCAAAAGAAGTTTGTCTATCTTAAAAACTGGAAAGCTGGTCCAAGTGCTCCTCCTATAATTCTGGCAAGGAGGGATAAG ACAGGGAAGGGGCCTCAGGACGAGAGTTTGGACATTGTGACAGGTGGTGGCTCTTCAGATGAGCTCTCAGATGAAGAAAGAATGGCAAATAAGAAACAGG AGAACAGGAGGAAACAAGAGAAGACTAATTTGGGAACACCAGCTCGATATGAAGTTGATGACCCAAACCTCGAGCAGTTCAAGTTTGAGTTGCAGGAGAT TCTAGTGAGCTATTCTTCTTGGATTTTCTTGGGTTGTTTTGAGGCAATATACCAGCAACGATACAAGAAACCATTGGACTATCAAAGTTTTGGTGTGGAT CAGCTAGAGCAGCTTTTTGACAAGGTGAGAGATGTCGTGGTCTTGCACGAAGAACCAGCAAGCAAGAAGAAATTCCTGGCTGCAGTTGGTGGCTAG
AA sequence Show only first row Show all	>Potri.009G100600.1 pacid=42771008 polypeptide=Potri.009G100600.1.p locus=Potri.009G100600 ID=Potri.009G100600.1.v4.1 annot-version=v4.1 MENANPSASMLPSDSPEQMGIHMADSNMQATQPSVNQQIRPSLDGPVAILWDIENCPVPSDVRSEDVAGNIRMALQVHPVIKGAVMMFSAYGDFNSFPRR LREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFSPALHILGQRGYTVILVIPSGVGVSSALCNAGKFVWDWPSVARGEGF IPPLKTLLPAHLGPADMAGYSMGCRINDSHDGQNEEEAIVYRGLAQSYYNLRDFSIVTRSLSEYNSSSLMSLPCFPTSSRSQSLPSGLKEVSAGPASYDD YYSTMWVQPGGINSLKAQLVKLLEISGGCLPLTRVPPEYQKMYGRPLCVSEYGALKLVNLFKKMGDAMAIDGKAQKKFVYLKNWKAGPSAPPIILARRDK TGKGPQDESLDIVTGGGSSDELSDEERMANKKQENRRKQEKTNLGTPARYEVDDPNLEQFKFELQEILVSYSSWIFLGCFEAIYQQRYKKPLDYQSFGVD QLEQLFDKVRDVVVLHEEPASKKKFLAAVGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15560			Putative endonuclease or glyco...		Potri.009G100600 [exp]	0	1
AT1G03070			Bax inhibitor-1 family protein...		Potri.002G049000 [exp]	3.60	0.9706
AT4G22740			glycine-rich protein (.1.2)		Potri.003G115400 [exp]	5.09	0.9638
AT5G49220			Protein of unknown function (D...		Potri.010G000700 [exp]	5.74	0.9635
AT5G47830			unknown protein		Potri.014G024500 [exp]	8.12	0.9544
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.014G116800 [exp]	8.77	0.8840	GOLS2.1
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Potri.016G120000 [exp]	10.77	0.9596
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.001G285500 [exp]	10.95	0.9355
AT1G09140		ATSRP30.1, ATSR...	Serine/Arginine-Rich Protein S...		Potri.005G024600 [exp]	12.12	0.9428
AT3G09350		Fes1A	Fes1A (.1.2.3)		Potri.006G088000 [exp]	12.84	0.9546
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.009G015700 [exp]	16.73	0.9283	Pt-PM37.1

Compare expression of checked genes

Potri.009G100600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.