Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MCCB.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34030 921 / 0 MCCB 3-methylcrotonyl-CoA carboxylase (.1) AT2G38040 43 / 0.0008 CAC3 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G095800 [exp] 47 / 3e-05 AT2G38040 870 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2) Potri.014G081000 [exp] 43 / 0.0007 AT2G38040 699 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014068 [exp] 994 / 0 AT4G34030 927 / 0.0 3-methylcrotonyl-CoA carboxylase (.1) Lus10019848 [exp] 971 / 0 AT4G34030 921 / 0.0 3-methylcrotonyl-CoA carboxylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF01039 [poplar] [flax] Carboxyl_trans Carboxyl transferase domain
Representative CDS sequence Show only first row Show all	>Potri.009G100800.1 pacid=42771548 polypeptide=Potri.009G100800.1.p locus=Potri.009G100800 ID=Potri.009G100800.1.v4.1 annot-version=v4.1 ATGCTAAGGAATTTAGCAAGAAAAGCAGTGTCAGCTACTTCAAATCCATGGAGATCATCAAAATCAATTCAGCTTCTCCAGAAAAGAGGCTTCTGCTTAG GAGTCCTTCCAGATGGAGTAGGCAGAAACTCTGAGGCCTTTGCACAGAATTCTAAGGCCATGGAGGGTCTTATTTCTCAACTCCAATCCCATATAAATAA GGTTCTCGCTGGAGGAGGAGAAGAAGCTGTGAAAAGAAACAGAAAAAGGAACAAGCTTTTGCCTAGAGAAAGAATTGATAAGCTAATTGACCCTGGTTCT TCATTTCTTGAGCTCTCTCAGCTTGCAGGCCATGAGTTGTATGGAGAAACATTACCATCTGGTGGAATAATCACTGGAATAGGTCCGGTTCATGGGCGTC TTTGTATGTTTGTGGCGAATGATCCTACTGTTAAGGGAGGAACTTATTATCCAATTACGGTGAAAAAACATCTTAGGGCACAAGAGATCGCTGCTCAATG CAAATTGCCATGCATATATCTTGTTGACAGTGGAGGAGCTTTTCTTCCAAAGCAGGCCGAGGTCTTCCCTGACAAGGATAATTTTGGTAGAATTTTCTAC AATCAAGCTGTAATGTCTGCGGAAGGAATTCCTCAAATTGCTCTGGTATTAGGTTCCTGCACTGCTGGTGGTGCCTATATTCCTGCAATGGCTGATGAAA GTGTGATGGTTAAAGGAAATGCTACCATCTTTCTAGCTGGACCACCACTTGTGAAGGCTGCTACAGGAGAGGAAGTCTCTGCGGAGGATTTAGGAGGTGC TTCTGTGCATTGCAAGACATCAGGGGTTTCGGATTATTTTGCTCAAGATGAATTGCATGGACTTGCACTTGGTAGGAACATCATCAAGAACTTGCACATG GCTGGGAAACAAGGGGTGATGAATGGATTGCATAATTTAAACCCTGAGTATAAGGAACCTTTATATGATGTAAAGGAGCTTCGGTCTATTGCACCAATAG ACCACAAGCAAGCCTTTGATATCCGATCAGTTATTGCCCGGATTGTTGATGGAAGTGAATTTGATGAATTCAAGAAACAGTATGGAACTACTCTCGTAAC AGGGTTTGCTAGAATTTTTGGACAACCAGTTGGTATCCTTGGAAACAACGGGATACTCTTCAATGAATCTGCACTTAAAGGGGCCCATTTCATTGAACTA TGCACTCAACGTAACATTCCCTTGGTCTTTTTACAGAATATCACTGGATTCATGGTTGGGTCAAGGTCTGAGGCAAATGGCATCGCAAAATCTGGAGCGA AAATGGTAATGGCAGTTTCTTGTGCAAAGGTCCCCAAGGTAACCATCATGGTTGGTGGAAGTTTTGGTGCTGGAAATTATGCAATGTGTGGTCGTGCATA TAGTCCCAACTTCTTGTTCCTTTGGCCAAATGCCAAAATATCTGTGATGGGTGGTGCTCAGGCTGCTAGCGTGCTGTCTCAAATCGAAACGGCAAACAAG AAAAAGCAAGGAATTCAGTGGACAGAGGAGGAACAAGAAAACTTCAAGTCGAAGATCACAGAAGCATACGAGCGAGAAGGAAATTGTTATTACTCCACAG CAAGGCTCTGGGATGATGGAATCATCGATCCAGCTGACACGAGAAAAATCATTGGCTTTTGCATCTCTGCTTCCTTGAACCGTCCCTCGGAAGACACCAA ATATGGTGTATTTAGAATGTAA
AA sequence Show only first row Show all	>Potri.009G100800.1 pacid=42771548 polypeptide=Potri.009G100800.1.p locus=Potri.009G100800 ID=Potri.009G100800.1.v4.1 annot-version=v4.1 MLRNLARKAVSATSNPWRSSKSIQLLQKRGFCLGVLPDGVGRNSEAFAQNSKAMEGLISQLQSHINKVLAGGGEEAVKRNRKRNKLLPRERIDKLIDPGS SFLELSQLAGHELYGETLPSGGIITGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCKLPCIYLVDSGGAFLPKQAEVFPDKDNFGRIFY NQAVMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNATIFLAGPPLVKAATGEEVSAEDLGGASVHCKTSGVSDYFAQDELHGLALGRNIIKNLHM AGKQGVMNGLHNLNPEYKEPLYDVKELRSIAPIDHKQAFDIRSVIARIVDGSEFDEFKKQYGTTLVTGFARIFGQPVGILGNNGILFNESALKGAHFIEL CTQRNIPLVFLQNITGFMVGSRSEANGIAKSGAKMVMAVSCAKVPKVTIMVGGSFGAGNYAMCGRAYSPNFLFLWPNAKISVMGGAQAASVLSQIETANK KKQGIQWTEEEQENFKSKITEAYEREGNCYYSTARLWDDGIIDPADTRKIIGFCISASLNRPSEDTKYGVFRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Potri.009G100800 [exp]	0	1	Pt-MCCB.1
AT1G60160			Potassium transporter family p...		Potri.010G094400 [exp]	4.00	0.8582
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Potri.001G190700 [exp]	7.74	0.8592
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.015G133100 [exp]	22.31	0.8534	AAT1.2,PtrCAT12
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Potri.003G052800 [exp]	27.34	0.8104
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Potri.005G156600 [exp]	43.43	0.7965
AT5G52120		ATPP2-A14	phloem protein 2-A14 (.1)		Potri.012G136200 [exp]	60.86	0.8146
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.004G144300 [exp]	63.26	0.8101	SQN.2
AT5G24320			Transducin/WD40 repeat-like su...		Potri.007G110500 [exp]	65.72	0.7984
AT1G78560			Sodium Bile acid symporter fam...		Potri.003G008700 [exp]	73.60	0.7791
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Potri.011G164100 [exp]	87.90	0.7780

Compare expression of checked genes

Potri.009G100800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.