Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34020 552 / 0 AtDJ1C DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) AT1G53280 356 / 2e-119 AtDJ1B DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) AT3G14990 329 / 2e-109 AtDJ1A DJ-1 homolog A, Class I glutamine amidotransferase-like superfamily protein (.1.2.3) AT3G02720 42 / 0.0007 Class I glutamine amidotransferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G111900 [exp] 388 / 1e-131 AT1G53280 581 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019849 [exp] 608 / 0 AT4G34020 537 / 0.0 DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) Lus10014067 [exp] 537 / 0 AT4G34020 454 / 1e-157 DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) Lus10020345 [exp] 360 / 2e-120 AT1G53280 564 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) Lus10009525 [exp] 358 / 5e-120 AT1G53280 562 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) Lus10014721 [exp] 43 / 0.0004 AT2G38860 490 / 2e-173 Class I glutamine amidotransferase-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [poplar] [flax] Glutaminase_I PF01965 [poplar] [flax] DJ-1_PfpI DJ-1/PfpI family
Representative CDS sequence Show only first row Show all	>Potri.009G100900.1 pacid=42772565 polypeptide=Potri.009G100900.1.p locus=Potri.009G100900 ID=Potri.009G100900.1.v4.1 annot-version=v4.1 ATGGAGTCTATGCTCTGTCTTCTCTCACCATCTCCTACAAAGCTCTCTCCTTTCAAGAAACTAACTTCAACTTGTGCCTTAAAAACTACATTTTCCTCTT TATCATTTGCTTCCATGACCTCTCCTCCACAGCCAAAAACACCCTCTACAAAAAAACTCTCTTCTTCAAAACCCACCAAAACCCTATCTCCAAAAACACC CACAACATCAACGAGTGTTCAAGAAACAAGCACTCCATTCTCTCCTCCTCTCAAAAAGGTTCTGGTGCCAATAGGTTTTGGTACAGAAGAAATGGAAGCA GTTATTATCGTTGATGTTTTGAGGAGAGCTGGTGCTGAGGTAATTGTTGCTTCAGTAGAACCACAGCTTGAAGTTGAAGCTGCAGGTGGCACTAGGCTTG TTGCTGATACCTCCATTTCCAAATGTGCCAATGAAGTTTTCGATCTTGTTGCTTTGCCGGGAGGAATGCCAGGCTCCGCAAGGTTGAGAGATTGTGAAGT TCTCAGGCAAATTACAAGCAAACAAGCTGAGGATAAGAGATTATATGGAGCTATATGTGCCGCTCCGGCAATCACTCTTCTTCCATGGGGCCTTCTGAGG AGAAAGCAGATGACAGGTCACCCTGCATTTATGGACAAGCTTCCTACTTTCTGGGCTGTTGCATCAAAAATTCAAGTTTCAGGAGAGCTTACAACAAGCC GCGGTCCAGGAACTTCTTTCGAGTTTGCTCTATCCTTAGTAGACCAGCTGTTTGGAGAGTCTGTTGCCAAGGAGGTTGGACAATTGTTGCTAATGCAAGC TGATGATGACACCCAGAGAAAAGAAGAATATAACAAAGTTGAATGGTCTTTTGATCACAATCCTCGTGTTCTCCTTCCAATTGCAAATGGTTCTGAAGAG ATTGAAATAGTTGCTATTGTAGATATTTTAAGGCGGGCAAAGGTGGATGTTGTGGTTGCTTCAATTGAAAAATCAGTGCAAATTTTGGCATCACGAGGCA TAAAAATTGTCGCTGACAAGTTAATTGGTGATGCTGCTGAATCAGTATATGATCTAATCATTCTACCAGGAGGAAATGCTGGGGCTGAGCGGCTACACAA ATCTAAGGTTCTAAAGAAGCTGCTCCAAGAGCAATATACAGCTGGCAGAATATATGGAGCAGTTTGTTCTTCCCCTGCAGTTCTTCACAGACAGGGTTTA CTAAAGGATAAGAGAGCCACTGCACACCCCTCTGTTGTGACCAACCTAAACAATGTATCAAATGGTGCCAAAGTAGTTATTGACGGTAAATTGATCACAA GCAAGGGACTTTCTACCGTAACAGATTTTGCTTTGGCTATTGTGAGCAAGCTTTTTGGCCATGCAAGGACAAGATGTGTAGCTGAGGGCCTTGTTTTTGA CTATCCCAGGAGTTAG
AA sequence Show only first row Show all	>Potri.009G100900.1 pacid=42772565 polypeptide=Potri.009G100900.1.p locus=Potri.009G100900 ID=Potri.009G100900.1.v4.1 annot-version=v4.1 MESMLCLLSPSPTKLSPFKKLTSTCALKTTFSSLSFASMTSPPQPKTPSTKKLSSSKPTKTLSPKTPTTSTSVQETSTPFSPPLKKVLVPIGFGTEEMEA VIIVDVLRRAGAEVIVASVEPQLEVEAAGGTRLVADTSISKCANEVFDLVALPGGMPGSARLRDCEVLRQITSKQAEDKRLYGAICAAPAITLLPWGLLR RKQMTGHPAFMDKLPTFWAVASKIQVSGELTTSRGPGTSFEFALSLVDQLFGESVAKEVGQLLLMQADDDTQRKEEYNKVEWSFDHNPRVLLPIANGSEE IEIVAIVDILRRAKVDVVVASIEKSVQILASRGIKIVADKLIGDAAESVYDLIILPGGNAGAERLHKSKVLKKLLQEQYTAGRIYGAVCSSPAVLHRQGL LKDKRATAHPSVVTNLNNVSNGAKVVIDGKLITSKGLSTVTDFALAIVSKLFGHARTRCVAEGLVFDYPRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Potri.009G100900 [exp]	0	1
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Potri.004G209900 [exp]	2.00	0.9323
AT4G31040			CemA-like proton extrusion pro...		Potri.006G080100 [exp]	3.16	0.9223
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.006G160300 [exp]	3.16	0.9342
AT2G25640			SPOC domain / Transcription el...		Potri.018G125500 [exp]	4.35	0.8902
AT1G03670			ankyrin repeat family protein ...		Potri.018G078450 [exp]	4.89	0.9214
AT1G23180			ARM repeat superfamily protein...		Potri.010G110200 [exp]	5.47	0.9038
AT5G14370			CCT motif family protein (.1)		Potri.001G339200 [exp]	5.74	0.8806
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Potri.008G067500 [exp]	6.48	0.8884
					Potri.018G138206 [exp]	6.92	0.9085
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	8.48	0.9045

Compare expression of checked genes

Potri.009G100900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.