Plant FIBer expression Database

Potri.009G101400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42900 57 / 2e-09 COR27 cold regulated gene 27 (.1.2.3)
AT4G33980 44 / 6e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G140701
[exp]
315 / 3e-109 AT4G33980 48 / 9e-07 unknown protein
Potri.002G125900
[exp]
88 / 3e-20 AT5G42900 107 / 8e-28 cold regulated gene 27 (.1.2.3)
Potri.014G029000
[exp]
79 / 3e-17 AT5G42900 121 / 3e-33 cold regulated gene 27 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014061
[exp]
43 / 7e-05 ND 37 / 0.003
PFAM info
Representative CDS sequence
>Potri.009G101400.1 pacid=42771558 polypeptide=Potri.009G101400.1.p locus=Potri.009G101400 ID=Potri.009G101400.1.v4.1 annot-version=v4.1
ATGGAGGAGAATCTCAGAGGCAATGTTCCGTTACCGGATCAGAAGAAGAAGAACAGTGAGTTGACTCGGTCGAACTCAGACTCCTCTGGTTTAACCCTTG
ACGACGCGAATGCAAGACCGCATGGTACATCTGCAGTGTGGACAGATGAGAAGCATGGGTTATATCTTGCCTCATTAGAAGCGTCATTTGTTAATAATCA
ATTGCACCATTCCATTCGTTTGCGTGGTTGGTTGGGCGAGATGGGAGGGAGGCCATGTTCATCGCCACACCAGTTCATGGTTCTTCGAGATAGTATTTGG
CAGAAGAAAAGGAATGAGCCATTGTTGGAAAGTACAGCCGATTCTCATTTTGTCAAGGACATTACTCCGGCGATGTGTCATTTGGCGTCTGCAGGAAACC
AGTGTAATGCTGCACACCATGATCTTCAAGGGCACAGTGTATATTGTGGTGGGGGGGTTCATGCAAGAGAGAATGCAACTGTCTTTGGTGGATTGGCAAG
AAGTTCAGAACAACACCCTGTGTGCTGCTTATGTTATCAGAATTATATTGGCAGCACTATAGAAGTCTCAGATCAGAACTTTGTTGAAGAAGACGAAGGA
GAGATGTTGAACTGTGTCCACATGGTGAAAAGATTGAGGACATCTGGAGCCGAGGCTTCAAGCAATGATCAAGCTGTGCCATTCACAAGGTCTGATACGA
GAGATGTTTCAACTGCCAGTCAATCTTCCTCTGAAAGAGAGGCACATGTGCATCAAGAATTGTTGTCAGAAAACCCCAATAGCTTTGTCCGCCAAAACTC
TCTGCATTATTTCTTAAGAGGGAGCTAA
AA sequence
>Potri.009G101400.1 pacid=42771558 polypeptide=Potri.009G101400.1.p locus=Potri.009G101400 ID=Potri.009G101400.1.v4.1 annot-version=v4.1
MEENLRGNVPLPDQKKKNSELTRSNSDSSGLTLDDANARPHGTSAVWTDEKHGLYLASLEASFVNNQLHHSIRLRGWLGEMGGRPCSSPHQFMVLRDSIW
QKKRNEPLLESTADSHFVKDITPAMCHLASAGNQCNAAHHDLQGHSVYCGGGVHARENATVFGGLARSSEQHPVCCLCYQNYIGSTIEVSDQNFVEEDEG
EMLNCVHMVKRLRTSGAEASSNDQAVPFTRSDTRDVSTASQSSSEREAHVHQELLSENPNSFVRQNSLHYFLRGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G42900 COR27 cold regulated gene 27 (.1.2.3... Potri.009G101400
[exp]
0 1
AT5G26570 ATGWD3, OK1, PW... PHOSPHOGLUCAN WATER DIKINASE, ... Potri.014G147900
[exp]
3.00 0.8458
AT5G42900 COR27 cold regulated gene 27 (.1.2.3... Potri.014G029000
[exp]
3.46 0.8379
AT1G68050 ADO3, FKF1 "flavin-binding, kelch repeat,... Potri.010G105700
[exp]
6.92 0.7915 FKF1.1
AT1G68050 ADO3, FKF1 "flavin-binding, kelch repeat,... Potri.008G135200
[exp]
8.12 0.8387 Pt-FKF1.2
AT5G42900 COR27 cold regulated gene 27 (.1.2.3... Potri.002G125900
[exp]
9.79 0.8126
AT2G40840 DPE2 disproportionating enzyme 2 (.... Potri.016G028900
[exp]
10.00 0.8429
AT3G05950 RmlC-like cupins superfamily p... Potri.013G051700
[exp]
11.66 0.7402
AT1G10760 GWD1, GWD, SOP1... STARCH EXCESS 1, Pyruvate phos... Potri.010G044100
[exp]
21.74 0.7921
AT3G07650 CO COL9 CONSTANS-like 9 (.1.2.3.4) Potri.014G170600
[exp]
33.15 0.8088 Pt-COL11.2
AT3G46970 ATPHS2, PHS2 Arabidopsis thaliana alpha-glu... Potri.009G041800
[exp]
33.76 0.8336

Potri.009G101400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.