Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FUCT3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19280 701 / 0 FUCTA, FUCT1, ATFUT11, FUT11 fucosyltransferase 11 (.1) AT1G49710 690 / 0 ATFUT12, FUCTB, FUCT2, FUT12 fucosyltransferase 12 (.1) AT1G71990 79 / 2e-15 ATFT4, ATFUT13, FUCTC, FT4-M, FUT13 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091200 [exp] 118 / 4e-32 AT3G19280 92 / 2e-23 fucosyltransferase 11 (.1) Potri.019G082200 [exp] 76 / 2e-14 AT1G71990 587 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Potri.013G111200 [exp] 74 / 5e-14 AT1G71990 576 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019855 [exp] 746 / 0 AT1G49710 650 / 0.0 fucosyltransferase 12 (.1) Lus10014060 [exp] 733 / 0 AT1G49710 642 / 0.0 fucosyltransferase 12 (.1) Lus10002401 [exp] 677 / 0 AT1G49710 607 / 0.0 fucosyltransferase 12 (.1) Lus10027899 [exp] 647 / 0 AT3G19280 580 / 0.0 fucosyltransferase 11 (.1) Lus10009440 [exp] 77 / 4e-15 AT1G71990 603 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Lus10006076 [exp] 76 / 1e-14 AT1G71990 607 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00852 [poplar] [flax] Glyco_transf_10 Glycosyltransferase family 10 (fucosyltransferase) C-term
Representative CDS sequence Show only first row Show all	>Potri.009G101500.3 pacid=42770856 polypeptide=Potri.009G101500.3.p locus=Potri.009G101500 ID=Potri.009G101500.3.v4.1 annot-version=v4.1 ATGGGTGTTTTGACAAATCTAAGAGGATCAAGAGCTGCAACAGCATCACAAGAAGGGTTGCCTGTATCAGATGGGTCACCATCAAATTCTACTCAAGTTT CAATCTTTAAAATGAAGTGGTCAAATTTTTTGCCAATTTTTGTTGCTCTTGTGGTGATAGCAGAGATCGCCTTTCTGGGTCGTCTTGATATGGCTAAAAA TGCCGATTTAGTTGATTCTTGGGCTGATAGTTTTTTCTACAGGTCAACTATATCTGCTGATATGGTGGAAAGTGATGATTTTGGATTGGAAACAGTGAAT ATGGATAAAACTAATGGAACTTCGGAGTCAGATAGCTGTGAGGAGTGGTTAGAAAAGGAGGATGCTGTGGTTTATTCAAGAGATTTTGATAAAGACCCCG TTTTGGTCGCTGGAGCGGAAAAGGAGTGGAACACATGTGGGGTGGAATGTCAGTTTGGATTTAACCCCAGTAAGAAGCCAGATGCTGGATTTGGCTTACC TCAACAAGGTGGAACAGCTAGTGTGTTAAGGTCGATGGAATCAGCTTCCTACTATGCAGAGAACAATATTGCTCACGCACGACGAAGGGGATATGATGTT GTAATGACAACGAGTCTCTCCTCAGATGTGCCAGTTGGATATTTTTCCTGGGCTGAGTATGATATCATGGCACCAGTGCAGCCAAAGACTGAGAAAGCAC TTGCTGCTGCTTTCATTTCCAATTGTGGTGCTCGCAACTTCCGCTTGCAAGCACTTGATGGACTTGAAAGGTCGAACATCAACATAGATTCCTATGGTAA CTGCCATCGGAACCATGACGGAAGAGTGGATAAAGTAAAGACTCTGAAGCGTTACAAATTTAGCTTGGCTTTTGAGAATTCCAATGAGGAGGATTATGTC ACAGAAAAATTCTTCCAATCTCTTGTTGCTGGAACCATACCTGTGGTAGTTGGTGCTCCAAATATTCAAGATTTTGCTCCTGCACCTAACTCAATTTTAC ATATCAAGGAGCTAGAAGATGTTGATTCAATTGCGAAGACTATGAAATACCTTGGAGAAAATCCTGATGCCTACAATCAATCATTAAGGTGGAAATACGA GGGCCCATCTGATTCTTTCAAGGCACTGGTAGATATGGCAGCAGTACACTCATCATGCCGTCTTTGCATTCACCTTGCTACTATGATTCGGGAGAAAGAG GAAAATAGCCCAGGGTTTAAGAGGCGTCCCTGCAGATGCACCAAAGACTTAGAGACCGTGTATCATTTATATGTAAGAGAGAGAGGAAGATTTCAGATGG AGTCCATTTTCTTGAGGTCTGGCAATCTAACTGTAAATGCTCTAGAGGCTGCAGTGCTCAAGAAGTTTAAGTCTTTGAAGCATGTGCCCATCTGGAAGCA GGAAAGACCTGAAAGCATAAGGGGAGGAGACGATTTTAAAGTTTACAGAGTATACCCTGTAGGCATGACACAGAGGCAAGCTCTGTACTCTTACAAATTC AACACTGATGATGATTTCAAGAATCACTTGGAAGTCAACCCATGTGCAAAGTTTGAGGTGATATTTGTCTAG
AA sequence Show only first row Show all	>Potri.009G101500.3 pacid=42770856 polypeptide=Potri.009G101500.3.p locus=Potri.009G101500 ID=Potri.009G101500.3.v4.1 annot-version=v4.1 MGVLTNLRGSRAATASQEGLPVSDGSPSNSTQVSIFKMKWSNFLPIFVALVVIAEIAFLGRLDMAKNADLVDSWADSFFYRSTISADMVESDDFGLETVN MDKTNGTSESDSCEEWLEKEDAVVYSRDFDKDPVLVAGAEKEWNTCGVECQFGFNPSKKPDAGFGLPQQGGTASVLRSMESASYYAENNIAHARRRGYDV VMTTSLSSDVPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCGARNFRLQALDGLERSNINIDSYGNCHRNHDGRVDKVKTLKRYKFSLAFENSNEEDYV TEKFFQSLVAGTIPVVVGAPNIQDFAPAPNSILHIKELEDVDSIAKTMKYLGENPDAYNQSLRWKYEGPSDSFKALVDMAAVHSSCRLCIHLATMIREKE ENSPGFKRRPCRCTKDLETVYHLYVRERGRFQMESIFLRSGNLTVNALEAAVLKKFKSLKHVPIWKQERPESIRGGDDFKVYRVYPVGMTQRQALYSYKF NTDDDFKNHLEVNPCAKFEVIFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.009G101500 [exp]	0	1	FUCT3.2
AT4G39390		NST-K1, ATNST-K...	A. THALIANA NUCLEOTIDE SUGAR T...		Potri.005G086700 [exp]	3.16	0.9426
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.013G151300 [exp]	6.16	0.9399
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.016G010200 [exp]	6.16	0.8910
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G151366 [exp]	6.92	0.9388
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G014966 [exp]	9.59	0.9277
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.019G121200 [exp]	10.00	0.9260	FLA14.11
AT3G15810			Protein of unknown function (D...		Potri.006G067000 [exp]	10.81	0.8997
					Potri.009G086850 [exp]	11.74	0.8861
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.004G210600 [exp]	13.49	0.9219
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012100 [exp]	14.14	0.9202	PtrFLA14-9,FLA14.9

Compare expression of checked genes

Potri.009G101500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.