Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15620 430 / 2e-148 ATHNIR, NIR1 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140800 [exp] 494 / 7e-174 AT2G15620 1021 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014059 [exp] 428 / 8e-148 AT2G15620 960 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1) Lus10019856 [exp] 412 / 2e-142 AT2G15620 583 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01077 [poplar] [flax] NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain PF03460 [poplar] [flax] NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Representative CDS sequence Show only first row Show all	>Potri.009G101600.2 pacid=42771594 polypeptide=Potri.009G101601.1.p locus=Potri.009G101600 ID=Potri.009G101600.2.v4.1 annot-version=v4.1 ATGTCATCGCTTTCAGTTCGTTTTCTTACACCACCTTTGTCACACGCAACTCCAAGCTCCTCTGCAAGACAAAGACTCTTCGCTGGACCCCCCACAGTGG CTCAGCCAGTGGATGCAGGGAGGTTGGAACCAAGAGTGGATGAGAGGGATGGATACTATGTGTTGAAAGAGAAGTTTAGACAAGGGATTAATCCTCAAGA GAAAGTGAAGATAAAGACAGAGCCAATGAAGCTTTTCATGGAAAATGGGATTGAGGAGCTAGCTAAGTTGTCGATGGAAGAGATTGACAAAGAGAAGAGC AGTAAAGATGATATTGATGTTAGACTCAAGTGGCTTGGTCTCCTTCACAGAAGGAAGCATCGACATTGTAGATTTATGATCAGATTGAAGTTACCAAATG GGGTAACAACAAGTGCACAAACAAGATACCTGGCGAGTGTGATAAGGAAATATGGGAAAGATGGTTGGGCAGATGTGACAACTAGACAAAACTGGCAAAT CCGTGGTCTGCAGAGTGGCATGGACAACGTTAGAAACCCTGTGGGGAATCCTCTTGCTGGGATTGATCCAGATGAGATTGTTGATACCGGGCCTTATACC AACTTGCTGCCAAGGAAGTGGAATGTATGTGTTGTGGGTTCTCATGATCTTTACGAGCATCCTCACATCAATGATCTTGCTTACGTGCCTCCTTTGAAGG ACTTGCGGTTTGGATTCAATTTTCTTGTGGGTGGGCTCTTTAGTCCCAAGCGACGTGCTGAGGCAGTTCCTCTTGATGCCTGGGTCCCAGTTTGCAGAGC AGTTTTAGAGGCCTGCATAGATCTTGGCTTCAGAAGGAACAGGCAAAAAACAAGAATGATGTGGTGGTTGATTGACGAGCTTGGCATTGAAGGATTCAGA TCAGAAGTAGTGAAAAGAATTCCCCATCAATGGCTAGAGAATCTTCTGAAGATTTGA
AA sequence Show only first row Show all	>Potri.009G101600.2 pacid=42771594 polypeptide=Potri.009G101601.1.p locus=Potri.009G101600 ID=Potri.009G101600.2.v4.1 annot-version=v4.1 MSSLSVRFLTPPLSHATPSSSARQRLFAGPPTVAQPVDAGRLEPRVDERDGYYVLKEKFRQGINPQEKVKIKTEPMKLFMENGIEELAKLSMEEIDKEKS SKDDIDVRLKWLGLLHRRKHRHCRFMIRLKLPNGVTTSAQTRYLASVIRKYGKDGWADVTTRQNWQIRGLQSGMDNVRNPVGNPLAGIDPDEIVDTGPYT NLLPRKWNVCVVGSHDLYEHPHINDLAYVPPLKDLRFGFNFLVGGLFSPKRRAEAVPLDAWVPVCRAVLEACIDLGFRRNRQKTRMMWWLIDELGIEGFR SEVVKRIPHQWLENLLKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Potri.009G101600 [exp]	0	1
AT5G63520			unknown protein		Potri.012G100600 [exp]	2.00	0.9900
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004400 [exp]	5.65	0.9833
AT4G05030			Copper transport protein famil...		Potri.016G002600 [exp]	12.00	0.9741
AT5G06370			NC domain-containing protein-r...		Potri.013G043100 [exp]	15.09	0.9760
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.014G001200 [exp]	17.94	0.9759
AT3G56891			Heavy metal transport/detoxifi...		Potri.006G024800 [exp]	19.02	0.9271
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G011601 [exp]	20.12	0.9735
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108766 [exp]	23.87	0.9670
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032650 [exp]	24.37	0.9227
					Potri.006G271692 [exp]	25.65	0.9696

Compare expression of checked genes

Potri.009G101600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.