Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23710 75 / 3e-15 Protein of unknown function (DUF1645) (.1) AT5G62770 71 / 7e-14 Protein of unknown function (DUF1645) (.1) AT1G70420 65 / 7e-12 Protein of unknown function (DUF1645) (.1) AT3G27880 61 / 7e-11 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G081000 [exp] 322 / 1e-110 AT1G23710 104 / 5e-26 Protein of unknown function (DUF1645) (.1) Potri.008G156901 [exp] 288 / 1e-98 AT1G23710 57 / 1e-09 Protein of unknown function (DUF1645) (.1) Potri.015G076400 [exp] 243 / 5e-79 AT1G23710 91 / 6e-21 Protein of unknown function (DUF1645) (.1) Potri.010G041300 [exp] 69 / 2e-13 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013011 [exp] 66 / 4e-12 AT1G70420 159 / 1e-47 Protein of unknown function (DUF1645) (.1) Lus10029153 [exp] 63 / 3e-11 AT1G70420 159 / 1e-47 Protein of unknown function (DUF1645) (.1) Lus10014541 [exp] 62 / 8e-11 AT3G27880 120 / 6e-33 Protein of unknown function (DUF1645) (.1) Lus10030876 [exp] 60 / 3e-10 AT1G70420 147 / 5e-43 Protein of unknown function (DUF1645) (.1) Lus10030612 [exp] 57 / 2e-09 AT1G70420 155 / 8e-46 Protein of unknown function (DUF1645) (.1) Lus10002380 [exp] 54 / 5e-08 AT1G70420 78 / 1e-16 Protein of unknown function (DUF1645) (.1) Lus10032145 [exp] 49 / 3e-07 AT3G27880 81 / 4e-19 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [poplar] [flax] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Potri.009G102101.1 pacid=42772304 polypeptide=Potri.009G102101.1.p locus=Potri.009G102101 ID=Potri.009G102101.1.v4.1 annot-version=v4.1 ATGAAAGCTGTAGAGAAACTTATCAAAGGGAAAGAAATCGAATTAGAGGAACTGGAAGGAGAGCAAACCAAGCTCAAATGCAGAAGCACTACAAAATTTC TGGCTTGGAAATTTGATGATGTCCCTCGAAGTGCCCTTAGCAAGCTGTCCCAACAGCCAAATTCATTAGCAACACCTATCGTGGTTGCTGCTCTTTCAGA CTCAACGCCACCACCTCCACACAGCCCTGTCACTCCTTTAAAGCAAAGAGAAGATTGCATTTCGACGGCGACGCAGCACCATAAAGTAAACCTTAACAAG ATCCAGGTTATGCCGACAATAGTCAACTGCTGGCAACACAGCGCACTTCACCTTCACCTATCGAAAACTGCAACCAATAGTACCCAAGATGCCAAGAAAC CAAATAGATTACCCCTCAGGAAGCTCTTCTACGAGGACCGTGAAACCTTTTCGTGTTCTTCATCGGAAGCTGATGATATTGACAGCCTAGAGCCTGAAAC TTACTGTGTGTGGGCGCCAAAGAAGGAGGAGGGGTCTCCAGGGAGCTGCAAGAAAAGCAGCTCTACAGGTTCTAATTCAAAGAGATGGAAGTTCAAAGAT TTTATTCACCGGAGTAATAGTGATGGTAAGGATACTTTTGTGTTCTTAATGCCTAATAACAAGAAGAGTGGCCTCCATCATCAGAGATTAGGCAACGATG ACCAAGATGGGAACCATAATAAACAGGGCACAGAGAAAAGAAAAGATGCGAAAGGAGCTGGAGGAGGTTTGTTTCAATTTCAAGAACATTATTACATGAG GAGTAAAGATGGTGATAAACGCCGCTCCTATTTGCCTTACAGGCCGGATTTGGTGGGGTTTCTGTCTAATGTTAATGGGGTGGGAAGGAATCTTCATCCA TTTTGA
AA sequence Show only first row Show all	>Potri.009G102101.1 pacid=42772304 polypeptide=Potri.009G102101.1.p locus=Potri.009G102101 ID=Potri.009G102101.1.v4.1 annot-version=v4.1 MKAVEKLIKGKEIELEELEGEQTKLKCRSTTKFLAWKFDDVPRSALSKLSQQPNSLATPIVVAALSDSTPPPPHSPVTPLKQREDCISTATQHHKVNLNK IQVMPTIVNCWQHSALHLHLSKTATNSTQDAKKPNRLPLRKLFYEDRETFSCSSSEADDIDSLEPETYCVWAPKKEEGSPGSCKKSSSTGSNSKRWKFKD FIHRSNSDGKDTFVFLMPNNKKSGLHHQRLGNDDQDGNHNKQGTEKRKDAKGAGGGLFQFQEHYYMRSKDGDKRRSYLPYRPDLVGFLSNVNGVGRNLHP F

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23710			Protein of unknown function (D...		Potri.009G102101 [exp]	0	1
AT1G23710			Protein of unknown function (D...		Potri.008G156901 [exp]	2.00	0.9461
					Potri.014G015400 [exp]	4.24	0.8817
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060300 [exp]	7.41	0.9048
AT2G37150			RING/U-box superfamily protein...		Potri.008G041201 [exp]	16.49	0.8974
AT1G15890			Disease resistance protein (CC...		Potri.003G062100 [exp]	19.41	0.8871
AT5G01320			Thiamine pyrophosphate depende...		Potri.017G151900 [exp]	21.44	0.8080
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.012G107900 [exp]	21.97	0.8770
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060126 [exp]	23.81	0.8727
AT5G17620			unknown protein		Potri.013G072300 [exp]	26.60	0.8893
AT1G27170			transmembrane receptors;ATP bi...		Potri.012G053200 [exp]	27.71	0.8827

Compare expression of checked genes

Potri.009G102101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.