Plant FIBer expression Database

Potri.009G102400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19220 193 / 5e-63 CYO1 ,SCO2 SNOWY COTYLEDON 2, SHI-YO-U MEANS COTYLEDON IN JAPANESE, protein disulfide isomerases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019862
[exp]
238 / 2e-80 AT3G19220 203 / 9e-67 SNOWY COTYLEDON 2, SHI-YO-U MEANS COTYLEDON IN JAPANESE, protein disulfide isomerases (.1)
Lus10014051
[exp]
205 / 4e-67 AT3G19220 171 / 6e-54 SNOWY COTYLEDON 2, SHI-YO-U MEANS COTYLEDON IN JAPANESE, protein disulfide isomerases (.1)
PFAM info
Representative CDS sequence
>Potri.009G102400.1 pacid=42771386 polypeptide=Potri.009G102400.1.p locus=Potri.009G102400 ID=Potri.009G102400.1.v4.1 annot-version=v4.1
ATGCTATCTATAAGCCCTACCTCTCTCTTCCTCCCTTCAAAACCCACCTTCAATAGAACCCGCTCTTTCCGCTGCTCTGCAGCCGGAGACCTCTCATTCC
CGCGGTGGCTTCAATTCACCTCGGCTGCTGATGCTTCCATTGGCGGAGGCAGCATCAGGATTGGACAAGAACTAGATGGAGCCGCTTCCGCAGATGGCGA
GAGGAAGGGGTTTGGGGGAAATAGTGGTGGCAGCAGCGTAAGAGTGAACGCAAGAGAAAAGAAATGGTCAAGAAACAGAGAGAGTTATTTGGCAGATAAT
GAAGATGCTTTACCTCTCCCAATGACTTATCCTGATTCTAAACCTGTGCCTCCTGAAGAGATTGATAAACGGTTAAGTTGTGATCCTGAAGTTGAGGATT
GCAGAGAGGTGGTTTATGAGTGGACTGGAAAGTGTCGAAGTTGCCAGGGTTCAGGGTTTGTCAGCTATTATAATAAAAGGGGGAAGGAGGTTACCTGCAA
ATGTGTACCATGCCTTGGAATTGGATACGTACAAAAGATAACAGCTCGGAAGGACATTGCTGTAATGGAGGAATTAGACAATGGAAAGCCATCCTGA
AA sequence
>Potri.009G102400.1 pacid=42771386 polypeptide=Potri.009G102400.1.p locus=Potri.009G102400 ID=Potri.009G102400.1.v4.1 annot-version=v4.1
MLSISPTSLFLPSKPTFNRTRSFRCSAAGDLSFPRWLQFTSAADASIGGGSIRIGQELDGAASADGERKGFGGNSGGSSVRVNAREKKWSRNRESYLADN
EDALPLPMTYPDSKPVPPEEIDKRLSCDPEVEDCREVVYEWTGKCRSCQGSGFVSYYNKRGKEVTCKCVPCLGIGYVQKITARKDIAVMEELDNGKPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G19220 CYO1 ,SCO2 SNOWY COTYLEDON 2, SHI-YO-U ME... Potri.009G102400
[exp]
0 1
AT4G34730 ribosome-binding factor A fami... Potri.004G164200
[exp]
3.60 0.9643
AT2G24020 Uncharacterised BCR, YbaB fami... Potri.018G105600
[exp]
6.00 0.9477
AT2G32480 ARASP ARABIDOPSIS SERIN PROTEASE (.1... Potri.002G228600
[exp]
7.74 0.9517
AT3G12930 Lojap-related protein (.1) Potri.011G142900
[exp]
9.05 0.9550
AT2G31450 ATNTH1 DNA glycosylase superfamily pr... Potri.007G127600
[exp]
9.43 0.9159
AT3G08010 ATAB2 RNA binding (.1) Potri.009G059600
[exp]
10.81 0.9530
AT5G51010 Rubredoxin-like superfamily pr... Potri.015G108100
[exp]
10.95 0.9521
AT5G22210 unknown protein Potri.009G162200
[exp]
12.00 0.9334
AT1G28150 unknown protein Potri.004G066900
[exp]
13.26 0.9444
AT2G20920 Protein of unknown function (D... Potri.004G177300
[exp]
14.73 0.9490

Potri.009G102400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.