Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15680 252 / 2e-86 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT5G37770 122 / 1e-35 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G24620 118 / 1e-33 EF hand calcium-binding protein family (.1) AT1G66400 116 / 3e-33 CML23 calmodulin like 23 (.1) AT1G18210 115 / 6e-33 Calcium-binding EF-hand family protein (.1.2) AT1G73630 115 / 1e-32 EF hand calcium-binding protein family (.1) AT2G36180 108 / 2e-30 EF hand calcium-binding protein family (.1) AT5G17470 108 / 3e-30 EF hand calcium-binding protein family (.1) AT3G03400 103 / 2e-28 EF hand calcium-binding protein family (.1) AT3G07490 99 / 2e-26 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G042900 [exp] 197 / 1e-64 AT2G15680 169 / 1e-53 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.004G089400 [exp] 120 / 7e-35 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.010G107100 [exp] 119 / 5e-34 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.017G126200 [exp] 117 / 1e-33 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.015G039500 [exp] 117 / 1e-33 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.008G134300 [exp] 115 / 2e-32 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.012G048200 [exp] 109 / 2e-30 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.014G070700 [exp] 108 / 1e-29 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2) Potri.017G029700 [exp] 103 / 2e-27 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014050 [exp] 271 / 5e-94 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10019863 [exp] 262 / 2e-90 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10028913 [exp] 115 / 6e-33 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10031345 [exp] 115 / 1e-32 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10018012 [exp] 115 / 2e-32 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 114 / 2e-32 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10004330 [exp] 114 / 3e-32 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10009127 [exp] 108 / 4e-29 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10009564 [exp] 99 / 2e-26 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10027701 [exp] 96 / 1e-24 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.009G102500.1 pacid=42770800 polypeptide=Potri.009G102500.1.p locus=Potri.009G102500 ID=Potri.009G102500.1.v4.1 annot-version=v4.1 ATGGCAAACCTTAGCTTTCTAGAGTTCCAGTACAAGCTTTCAAGGAACAAGTTTTTGCGAAAGCCATCTCGATTGTTTTCTTCCCGGGATAGACAAAGCT CTGGCATGCTGTCCACTTTCCAGCCAAATATGAAGGAAATGAGGCAAGTTTTTGATAAATTTGATTCCAACAAAGATGGCAAGATTTCTCAGCAAGAGTA CAAGGATACCCTGAGAGCGTTGGGACAGGGTAACATGCTTGGAGAAGTGCCAAAAATTTTCCAGGTTGTTGATTTGGATGGAGATGGATTCATTGATTTC AAAGAGTTTGTGGAAGCGCAGAAGAAGGGAGGAGGAATTAGGACAACAGACATTCAGACTGCTTTCCAGACATTTGATTCGAACGGAGATGGTAAGATAA GTGCAGAGGAAGTTATGGAAGTCCTGAGGCGTCTTGGTGAGAGGTGCAGCCTAGAGGATTGCCGGAGAATGGTGAACGCAGTGGACATTGATGGTGATGG TATGGTTAACATGGACGAGTTTATGACAATGATGACTCGATCTATGACTAGTGGTTAA
AA sequence Show only first row Show all	>Potri.009G102500.1 pacid=42770800 polypeptide=Potri.009G102500.1.p locus=Potri.009G102500 ID=Potri.009G102500.1.v4.1 annot-version=v4.1 MANLSFLEFQYKLSRNKFLRKPSRLFSSRDRQSSGMLSTFQPNMKEMRQVFDKFDSNKDGKISQQEYKDTLRALGQGNMLGEVPKIFQVVDLDGDGFIDF KEFVEAQKKGGGIRTTDIQTAFQTFDSNGDGKISAEEVMEVLRRLGERCSLEDCRRMVNAVDIDGDGMVNMDEFMTMMTRSMTSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Potri.009G102500 [exp]	0	1
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.004G081300 [exp]	2.23	0.9786
AT5G53730			Late embryogenesis abundant (L...		Potri.012G006000 [exp]	4.47	0.9585
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.008G101000 [exp]	4.89	0.9771	Pt-GAS1.1
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Potri.005G098200 [exp]	5.00	0.9755
					Potri.001G248708 [exp]	5.65	0.9757
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200600 [exp]	8.83	0.9754
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.011G123300 [exp]	9.94	0.9682	Pt-ATNAC3.2,NAC036
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Potri.008G122100 [exp]	10.58	0.9620
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G100801 [exp]	10.95	0.9623
					Potri.002G146901 [exp]	12.36	0.9618

Compare expression of checked genes

Potri.009G102500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.