Plant FIBer expression Database

Potri.009G102800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34419 94 / 4e-25 unknown protein
AT3G19200 86 / 1e-21 unknown protein
AT3G50640 71 / 1e-15 unknown protein
AT5G66800 70 / 5e-15 unknown protein
AT1G79060 41 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G141600
[exp]
277 / 1e-96 AT4G34419 95 / 2e-25 unknown protein
Potri.007G042600
[exp]
164 / 4e-52 AT5G66800 121 / 4e-35 unknown protein
Potri.005G098300
[exp]
48 / 9e-07 AT3G12970 162 / 3e-45 unknown protein
Potri.007G065200
[exp]
47 / 2e-06 AT1G79060 119 / 1e-29 unknown protein
Potri.008G150300
[exp]
44 / 1e-05 AT3G05980 154 / 3e-46 unknown protein
Potri.010G090700
[exp]
41 / 0.0001 AT3G05980 141 / 2e-41 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019867
[exp]
131 / 1e-39 AT3G19200 89 / 3e-23 unknown protein
Lus10014046
[exp]
128 / 7e-38 AT3G19200 89 / 8e-23 unknown protein
Lus10009349
[exp]
100 / 1e-26 AT5G66800 113 / 5e-32 unknown protein
Lus10019352
[exp]
81 / 1e-19 AT5G66800 85 / 3e-21 unknown protein
Lus10031795
[exp]
44 / 3e-05 AT1G79060 253 / 3e-80 unknown protein
Lus10031218
[exp]
41 / 0.0002 AT1G79060 253 / 7e-80 unknown protein
PFAM info
Representative CDS sequence
>Potri.009G102800.1 pacid=42771642 polypeptide=Potri.009G102800.1.p locus=Potri.009G102800 ID=Potri.009G102800.1.v4.1 annot-version=v4.1
ATGGCATGGTTGAAAATGTTCAACGGTGAGCAACAAAGCTTTTACTTTTCCTCTATGGACCCAAGAATTTCCTTCTCTAATGATTTTGCTGATGCAAAAA
AAGCTAACAAGTATGAAAGCAGTTATAGAGAAGCACCAGTTTCCACAGATTTCGAGTTCTCAGTGAAAAACGACTCCATGATTCCTGCAGATGAAATCTT
CTTCGAGGGTACAATGCTGCCTTTGAAGGATAACTGCACCAACCAACAGCGAAAAATGACCTTACGAGATGAGTTACTTGTCGATGATGAGTATGATAAT
GCGTTCCCAGCACCAAAGATTTCAGGCTGGTGGAAGGAAAAACTGGGCTTAAAGAGGGGTCACATTGCACCTAAGAAGAGCGATAGGGTCGCTGGGGTTT
TGGATAGAGTTGTTGAAGAGATGCCTACTTTTGTTCATGAAGAGGGACTGGCTAACAAGAGAACACAGGAAGTGTTGGTTGAAGGAGGGTTAAGTTGTAA
AGATGGTGCAATGAAATGTTATCCAAAGTGA
AA sequence
>Potri.009G102800.1 pacid=42771642 polypeptide=Potri.009G102800.1.p locus=Potri.009G102800 ID=Potri.009G102800.1.v4.1 annot-version=v4.1
MAWLKMFNGEQQSFYFSSMDPRISFSNDFADAKKANKYESSYREAPVSTDFEFSVKNDSMIPADEIFFEGTMLPLKDNCTNQQRKMTLRDELLVDDEYDN
AFPAPKISGWWKEKLGLKRGHIAPKKSDRVAGVLDRVVEEMPTFVHEEGLANKRTQEVLVEGGLSCKDGAMKCYPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G34419 unknown protein Potri.009G102800
[exp]
0 1
AT5G44550 Uncharacterised protein family... Potri.001G442300
[exp]
2.23 0.9800
AT5G23190 CYP86B1 "cytochrome P450, family 86, s... Potri.007G072100
[exp]
2.82 0.9776
AT4G10350 NAC BRN2, NST4, ANA... BEARSKIN 2, NAC domain contain... Potri.019G066000
[exp]
3.46 0.9679
AT1G76490 HMGR1, HMG1, At... 3-HYDROXY-3-METHYLGLUTARYL COA... Potri.011G145000
[exp]
4.47 0.9664 Pt-HMGR3.2
AT5G57620 MYB ATMYB36 myb domain protein 36 (.1) Potri.018G095900
[exp]
4.47 0.9672
AT1G15385 unknown protein Potri.003G062300
[exp]
5.29 0.9658
AT1G79580 NAC ANAC033, SMB, N... NAC (No Apical Meristem) domai... Potri.010G176600
[exp]
5.47 0.9661
AT5G06200 CASP4 Casparian strip membrane domai... Potri.006G208800
[exp]
7.74 0.9593
AT1G12740 CYP87A2 "cytochrome P450, family 87, s... Potri.001G109100
[exp]
9.21 0.9196 Pt-CYP87.1
AT2G35930 PUB23 plant U-box 23 (.1) Potri.009G016200
[exp]
10.48 0.9475

Potri.009G102800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.