Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19190 1477 / 0 ATATG2 autophagy 2 (.1) AT5G24740 47 / 0.0001 Protein of unknown function (DUF1162) (.1), Protein of unknown function (DUF1162) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G141700 [exp] 3171 / 0 AT3G19190 1412 / 0.0 autophagy 2 (.1) Potri.008G100600 [exp] 48 / 0.0001 AT1G48090 3782 / 0.0 calcium-dependent lipid-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019868 [exp] 1488 / 0 AT3G19190 1357 / 0.0 autophagy 2 (.1) Lus10014045 [exp] 1484 / 0 AT3G19190 1324 / 0.0 autophagy 2 (.1) Lus10017108 [exp] 44 / 0.0003 AT1G48090 206 / 2e-62 calcium-dependent lipid-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12624 [poplar] [flax] Chorein_N N-terminal region of Chorein or VPS13
Representative CDS sequence Show only first row Show all	>Potri.009G102900.5 pacid=42772251 polypeptide=Potri.009G102900.5.p locus=Potri.009G102900 ID=Potri.009G102900.5.v4.1 annot-version=v4.1 ATGTTTTCGTGGAATTTTGCGAAATCGGCGGAGGCGGTACTGTCGCGGTGGGCGATGAAAAGGCTGTGCAAGTTTGTATTGAAGAAGAAATTAGGGAAGT TTATATTAGGAGATATTGATCTTGACCAGCTCGATGTTCAACTCGCTGAAGGCACTATTCAACTCAGTGATCTTGCTCTCAATGTCGATTGTCTTAATGA AAAGTTTGGGGCAGCGGCATCCGTGATGATAAAAGAAGGGTCAATTGGCTCATTGTCGGTCAAAATGCCATGGAAGGGTAAAGGTTTTCAGGTTGAGGTG GATGAGCTTGAGCTTGTACTTGCACCCTGTTTGAAGAAAAGGAATTCACCAGCTGACGACGAGACTAGTAGTTCTAGTCAAGAGAGTAGACATGGGCACA AGGAGGTGGGGAGGTTTGGGAATGATTTGATGGAAAATGCTCAAAAATCTAGTTTTGTTGACGTTCATGAAGGCGTCAAGACAATCGCAAAGGTGGTGAA GTGGTTTTTGACTAGTTTCCATGTAAAGGTTAAGAAGTTGATTGTTGCATATGAGCCATATTTCGAGAAGGATGAAAAGAAGGTTGGGTGTCAAGAAACT TTGGTCCTCAGAGTACCTGAAATAGAATGTGGAACCTGTGTTTCTGAAGATGCTAACTTAAGTTCTGATGAAAGAGTTGAGAACTTTCTAGGCATTAGTC AGTTAATGAATTTTATTAAGTTTCAAGGAGCAGTGCTTGAACTTCTCAAAACAGATGGTGTTGACAATCAAAGTTGCAGTCCATGTGTGTCAGATTCAAG TTTTAGTGAGCAATTTTCAGGGCGCTGCCGATCAAAACCTACAACTCCTATTGTGACAGGGAAAAAAGGTGGATTTTCAGGGAATTTAAAGCTAAGTATT CCTTGGAAGAATGGTTCATTAGACATTCACAAATTAGATGCAGAGGTTTGTGTGGATCCTGTAGAATTAAGACTTCAACCAAGCACAATCAAGTGGTTCC TACTTTCATGGGAAACTTATAAGAATATTGATCAAGATGGCAGGGGGGATGCACATTATAAATCAACCGAACCAGTCTACTTTAATTCTTCTTCTCATTT CCATTCTTCGTTATCTATCCCTGGTGTGGTTGCTAATGATAAAGTGAGCCCTGTTCGTGGTAGCCTTACATCTGCCCTTTCTTCTTTCACCGGGAAAGAA TCAGTTAGTGAAGCAATGCTACCTGGATCACATCTTATATCTGACTGGGTGCCAAATTCTATTCAAAACGAGAAAGATGGTATCCAAGAAGAATTAGACC TAGGAGCAAGTGTGGACCAATTTTTCGAATGTTTAGATGGAATGAGAAGTTCACAATCAGCTCTGGGAAGCAGCGGGATGTGGAACTGGACATGTTCTGT TTTCAGTGCATTAACTGCAGCATCCAGCCTTGCTTCTGGATCTTTTCAAATCCCTTCTGAAGACCAGCATGTTCAAACCACCCTTAAAGTGACTTTGGCT GGAGTTTCTGTCTTGCTATCCTTTCAGGATGAAGATCAGGAATATCTGTATGGTCAAAAGAGTGATCAGAATACTGTTGGACTGGAGATTCGTTGTCTTA GTGCAGAATGCAAAGATATTTTTGTTGTTTTGCAGGTTTGTCCTCAAGAAATGAGGTTTGAAGGAACAGTGAAGTGTATTGAGGTTATTGATTACTTGTA CGATAAAAATGATGCCATGAATAGTCACTCGACGGAGTTTAGCAACAGTCAAACTGTTTTGATCCAGAATCTGCAATCTGAAGTCCAAGGTGTTCTCCCT CCATTTCCTCATTCAGATGAATTAAGTACATTAATTGCACCAGGAGTTCCATTTGGAAATGCGACCAAGATGAAACTGCTTGGTACCTCAGGTGTCACTC GGTGCCAATTTACTGTATATTCTGATTCGTCAGATGGAAATTTTACTGGAACAAAGTCATTTTCATTGCAACTGCCGTTGTTAATATTCTGGGTGAACTT TGCTTCAGTAAACGTGATACTGAATCTTCTGAAGGATGCTGAAAAGTCTGTTGAAAGGAGTATCCAGAGGAATGGATTTCCATCTGTCAATAAGAAGCAT GAATCATCTCATGGAAATATGAAAAAAGGTTCAAGTTCTAGGGTTTCAACATTGACCTCTACAGAAAATTTGCAAGGTAGTATATCAGTCCTTAAGGCGA GGGTAATACTATGTTTCCCATTTGTAAGCGGTGGAGATATTGGAGGCCACTCTCCCTGGAATCAATTTATTGCTGTTGATATTTCTTCACCGTCGATCTT GGAAAGCCCAACATCGAATTCCAGTTCGTGGAAAAGGCATGCACCAAGGACCATATGTTCTTTGCATTTGAATGTTAGTAATCTCAAGGTTTACTTGGTC AATCCAGCTTGTAATGATGATGGAACTACCTTGTCTACTTTGATGCCAAGGTATAGATTTTGTGCACAGAAGATTGTGTCTGTGAGTAATAGAGCTGGTT GCCTATGTACAATTAGTATGCTTTGGCAGGAAGACCCCGTGACTGGTCCTTGGATAGCTGAGAAAGCCAAGTCTCTGGCAACTTCAGAGGAATCCAGGAG CAGGAAAAAAATCAAGGTGAAAGGATATGAATTTGCTAGTGCAACTGCTGCAAAGGATCTAGGAGACATAAATTTGCAAACCAGAGAAGAGTTAATTTTG AGCTCTGCATTCTTCTTGCATGTTCATCTGCTTCCTGTTGTGGTGGATCTTAGCAGTTCTCAGTATAGAAATTTGCATTGCCTTCTAGATCAGATGATTA ATGGATTATCAGGCATGGCCTGCAATGTAGACGGTGTTAGGGAATTGTCTCCAGCCAGTCAAACATCAATTCTTGTGAAGTGTGAATCAGTAGATTTTTC AATTAGACCAGATATAAAGGATGACATAAAAAGTTCATTGCAGAGTGAACTTCCTGGATCATGGCATTGTTTAAAACTGAAAATTCAAAAATTTGATATG CTGTCCGTCTCAAATATTGGAGGTATCAGGGGTGCCAATTTCTTTTGGCTAGCCCATGGAGAAGGTAAATTATGGGGTTCCATCACCGGAGTTCCAGATC AAGAGTTTCTTCTGATTTCTTGTAGCAACTCCACTATGAAACGTGGAGATGGAGGAGGTTCCAATGCATTGTCTTCTAGCTTGGCTGGTTCTGAAATTAT ACACATATGGGATCCAAAGAGCTCACATGATTTTACATCTGTTAGTGTCAGATGTGCCACAGTTATTGCTGTTGGTGGTCGCTTGGATTGGCTGGATGCA ATATCCTCCTTCTTCATTTTGCCCTCTCCTAAAGTGGAGAAGGCAAACAATGAAAATCTGGCAAAGGGGGATTTGAATGCCCCTTCTGAAACTTCTTTCA TTCTAAAGTTGGTTGATATTGGAATAAGTTATGAGCCTTACTTGAAGAAGTCAGTGGTTAGGGATCTTCATTCCGAGTCTGGCTCCTCATATTCCATAGA AGAAACAGGTGAGCCGCACATTGCTTGTCTATTAGCTGCATCTTTGTTTTCTCTTTCCAATACAACAACGGAAGATTCTATTGATAATGATTACAAAATT AGAGTGCAAGATGTAGGGCTTCTTCTTGGTGCAGCACATGAGAATATTGGTGGCACTCATAGTGTGGAATATCTTCATAAGATGGGTTATGTGAGAGTTG CCCATGAGGCCCTGGTTGAAGCAATTTTGAGAACTGACTGTAAGAATGGCCTTCTCTGGGAGGTAGAATGCACAAAATCCCATATTTATGTGGAAACTTG CCATGACACTACTCGCGGTCTCATGTGCCTGGCTGCTCAATTCCAACAGCTCTATGCCCCTGACTTGGAGGAATCAGTTGTGCACTTGCAGAATAGGTGG AATGGTGTTTGTCAGACCCAAGAGAGAAACGAGTTCAATGATGAAGGTCGGATTTTCAATCATGATTGTGCGCCTTCGACTTCCCAAGTTCATGCCCCTA CTGCAGATACAAAGAGTAACCTTGGGGTGGTTGGTTTAATGGATGAGATATGTGAAGATGCATTTCACTTGCATGGGATTCAGGCATGCCGGTTTGATTC CAGTGGATCAGAAATTCGTGTTTCACTTGATGAAAGTCTCCTCGGAGAAGCTTGCAGCCTAAGTGTTGAAACTCCTGACTTCTTCTCAAATGATCTCTCT TATGATTGGCCAGTGCCTTTAATAGGCCTGGAAAGTAATCAAACCACATTTCTACAGAGTGGTTCTTTCCCAGAATTTATAGAAGGCTATTGTGTGTCTG ATTTACGCCCGTTGTCAGAATTATCCATGGGCAGGCAGTCACCACCTGAAAAACTTAAATGCATATCCAAGAATTTTGGCAATGCAGATCATGGAAGAGG AAATGGTGGATGGTATGGGGATGCCCCTTTGAGCATTGTTGAAAATCACATTTCTGGAGCAAGTAGTGAAGCTAGTGTGAATCAGGTTTTGGAAGACCAG CTTCCAACTTTGCATTCTGCAAGATCTGATGATTTTGGGAAGGCCACAGGACGTGTACTTTTTAAGAACATTGATGTGAGCTGGAGAATGTATGCTGGTT CTGACTGGCAGGCATATAAAAAGAATAGTGATCCATGTAGTCATACTTGTGGAAGGGATACAACTGTTTGTCTAGAGCTTGCATTGTCTGGAATGCAATT TCAATACAATGTCTTCCCAGTTGGTGGAGTATGTGCATCTAAGCTTTGTCTCACAGTTCAAGATTTTCATCTTTCTGATAAGAGTAAAACTGCACCGTGG AAACAGATACTTGGATATTATCATTCAAAAGATCATCCTAGGGAATCCACTTCAAAAGCATTCAAGCTGGACTTGGAAGCTGTCAGACCAGATCCTCTAA TCCCTCTTGAGGAATACCGGTTACGCATAACTCTCCTTCCTTTGCTATTGCATCTACATCAAAGCCAACTCGATTTTCTCATTAGCTTTTTTGGGCCCAA AAGCTTTTCAGCAGGCCAGTCTTCGGATCAAGATCAAAATTCAGATGGTGTAAAGACTTCTGCAACAAATAGCTGTAATCTTGCAGGACATACAATTGCA AATGAAGCATTGCTTCCCTTTTTTCAGAAGTTTGAAATATGGCCCATTATTCTTCGAGTTGACTACAGTCCCCATCGTGTTGATCTAGCAGCATTGAGCA GTGGGAAGTATGTGGAACTTGTGAACCTTGTCCCCTGGAAGGGGGTTGAACTACAGCTAAAACATGTTCATGCCGTTGGTGTCTATGGCTGGGGCAGTGT ATTTGAAACAATTATAGGGGAGTGGTTGGTGGAGATCTCTCGAAATCAGATGCATAAAATCTTGCAAGGCCTTCCTACCATCCGGTCCCTGGTTGCTGTT GGTTCTGGTGCTGCAAAGCTTGTTTCCTTGCCTGTTGAGAGCTACAGGAAGGATCATAAAATAATCAAGGGAATGCAAAGAGGTACAAGTGCATTTCTAA AAAGTATATCGCTTGAAGCTGTTGGATTTGGGGTGCATTTGGCAGCTGGGGCTCATGATATTTTGCTCCAAGCAGAGTATATTCTTACAAATATACCTTC TCCTCCTGTGTCATGGTCTGTACAAGCCAAAACTAAAGAAAATGTAAGATGCAATCAGCCAAAAGATGCCCAGCAAGGAATTCAACATGCATATGAGAGT CTCAGTGATGGCCTGGGAAAGTCCGCTTCTGCTTTAGTGCAGACTCCATTGAAAAAATATCAGCATGGAGCCAGCACAGTAACTGCCCTGGCAACTGCTG TACGGGCTGTTCCTGCTGCTGCCATAGCTCCTGTTTCTGCTTGTGCAGGTGCAATGCATTGTGCTCTTCTTGGCCTTAGAAATAGCCTTGACCCTGAACA CAAAAAAGAGTCCATGGAGAAGTATCTGGGTTCTTCAAAGCCAAATGACTGGGATTGA
AA sequence Show only first row Show all	>Potri.009G102900.5 pacid=42772251 polypeptide=Potri.009G102900.5.p locus=Potri.009G102900 ID=Potri.009G102900.5.v4.1 annot-version=v4.1 MFSWNFAKSAEAVLSRWAMKRLCKFVLKKKLGKFILGDIDLDQLDVQLAEGTIQLSDLALNVDCLNEKFGAAASVMIKEGSIGSLSVKMPWKGKGFQVEV DELELVLAPCLKKRNSPADDETSSSSQESRHGHKEVGRFGNDLMENAQKSSFVDVHEGVKTIAKVVKWFLTSFHVKVKKLIVAYEPYFEKDEKKVGCQET LVLRVPEIECGTCVSEDANLSSDERVENFLGISQLMNFIKFQGAVLELLKTDGVDNQSCSPCVSDSSFSEQFSGRCRSKPTTPIVTGKKGGFSGNLKLSI PWKNGSLDIHKLDAEVCVDPVELRLQPSTIKWFLLSWETYKNIDQDGRGDAHYKSTEPVYFNSSSHFHSSLSIPGVVANDKVSPVRGSLTSALSSFTGKE SVSEAMLPGSHLISDWVPNSIQNEKDGIQEELDLGASVDQFFECLDGMRSSQSALGSSGMWNWTCSVFSALTAASSLASGSFQIPSEDQHVQTTLKVTLA GVSVLLSFQDEDQEYLYGQKSDQNTVGLEIRCLSAECKDIFVVLQVCPQEMRFEGTVKCIEVIDYLYDKNDAMNSHSTEFSNSQTVLIQNLQSEVQGVLP PFPHSDELSTLIAPGVPFGNATKMKLLGTSGVTRCQFTVYSDSSDGNFTGTKSFSLQLPLLIFWVNFASVNVILNLLKDAEKSVERSIQRNGFPSVNKKH ESSHGNMKKGSSSRVSTLTSTENLQGSISVLKARVILCFPFVSGGDIGGHSPWNQFIAVDISSPSILESPTSNSSSWKRHAPRTICSLHLNVSNLKVYLV NPACNDDGTTLSTLMPRYRFCAQKIVSVSNRAGCLCTISMLWQEDPVTGPWIAEKAKSLATSEESRSRKKIKVKGYEFASATAAKDLGDINLQTREELIL SSAFFLHVHLLPVVVDLSSSQYRNLHCLLDQMINGLSGMACNVDGVRELSPASQTSILVKCESVDFSIRPDIKDDIKSSLQSELPGSWHCLKLKIQKFDM LSVSNIGGIRGANFFWLAHGEGKLWGSITGVPDQEFLLISCSNSTMKRGDGGGSNALSSSLAGSEIIHIWDPKSSHDFTSVSVRCATVIAVGGRLDWLDA ISSFFILPSPKVEKANNENLAKGDLNAPSETSFILKLVDIGISYEPYLKKSVVRDLHSESGSSYSIEETGEPHIACLLAASLFSLSNTTTEDSIDNDYKI RVQDVGLLLGAAHENIGGTHSVEYLHKMGYVRVAHEALVEAILRTDCKNGLLWEVECTKSHIYVETCHDTTRGLMCLAAQFQQLYAPDLEESVVHLQNRW NGVCQTQERNEFNDEGRIFNHDCAPSTSQVHAPTADTKSNLGVVGLMDEICEDAFHLHGIQACRFDSSGSEIRVSLDESLLGEACSLSVETPDFFSNDLS YDWPVPLIGLESNQTTFLQSGSFPEFIEGYCVSDLRPLSELSMGRQSPPEKLKCISKNFGNADHGRGNGGWYGDAPLSIVENHISGASSEASVNQVLEDQ LPTLHSARSDDFGKATGRVLFKNIDVSWRMYAGSDWQAYKKNSDPCSHTCGRDTTVCLELALSGMQFQYNVFPVGGVCASKLCLTVQDFHLSDKSKTAPW KQILGYYHSKDHPRESTSKAFKLDLEAVRPDPLIPLEEYRLRITLLPLLLHLHQSQLDFLISFFGPKSFSAGQSSDQDQNSDGVKTSATNSCNLAGHTIA NEALLPFFQKFEIWPIILRVDYSPHRVDLAALSSGKYVELVNLVPWKGVELQLKHVHAVGVYGWGSVFETIIGEWLVEISRNQMHKILQGLPTIRSLVAV GSGAAKLVSLPVESYRKDHKIIKGMQRGTSAFLKSISLEAVGFGVHLAAGAHDILLQAEYILTNIPSPPVSWSVQAKTKENVRCNQPKDAQQGIQHAYES LSDGLGKSASALVQTPLKKYQHGASTVTALATAVRAVPAAAIAPVSACAGAMHCALLGLRNSLDPEHKKESMEKYLGSSKPNDWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	0	1
AT5G58410			HEAT/U-box domain-containing p...		Potri.019G126000 [exp]	1.41	0.8798
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.004G147800 [exp]	2.00	0.9054
AT5G22450			unknown protein		Potri.004G203500 [exp]	3.46	0.8722
AT2G15900			Phox-associated domain;Phox-li...		Potri.009G108300 [exp]	3.46	0.8752
AT1G73660			protein tyrosine kinase family...		Potri.012G048400 [exp]	3.60	0.8525
AT1G63130			Tetratricopeptide repeat (TPR)...		Potri.005G046000 [exp]	3.74	0.8513
AT1G09730			Cysteine proteinases superfami...		Potri.002G105700 [exp]	4.00	0.8647
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	4.47	0.8744
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	5.00	0.8722
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.011G049700 [exp]	5.74	0.8588

Compare expression of checked genes

Potri.009G102900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.