Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 230 / 5e-75 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 180 / 1e-56 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 111 / 5e-29 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 47 / 7e-06 B3 VDD VERDANDI (.1) AT4G33280 47 / 7e-06 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT1G26680 47 / 1e-05 B3 REM17 transcriptional factor B3 family protein (.1) AT5G18090 40 / 0.001 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103200 [exp] 283 / 4e-96 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 193 / 2e-61 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031600 [exp] 186 / 1e-58 AT5G42700 156 / 1e-47 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 163 / 3e-47 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 153 / 2e-43 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 152 / 5e-43 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 142 / 1e-41 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 144 / 7e-40 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 134 / 4e-36 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014044 [exp] 236 / 3e-77 AT3G19184 250 / 2e-82 AP2/B3-like transcriptional factor family protein (.1) Lus10019870 [exp] 222 / 1e-70 AT3G19184 253 / 8e-83 AP2/B3-like transcriptional factor family protein (.1) Lus10006483 [exp] 203 / 4e-65 AT5G42700 242 / 4e-81 AP2/B3-like transcriptional factor family protein (.1) Lus10009764 [exp] 196 / 3e-62 AT5G42700 229 / 3e-76 AP2/B3-like transcriptional factor family protein (.1) Lus10007522 [exp] 154 / 9e-44 AT5G58280 206 / 9e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 154 / 8e-43 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 151 / 8e-43 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10017434 [exp] 143 / 3e-40 AT5G58280 205 / 7e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 137 / 2e-37 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 137 / 4e-37 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G103100.1 pacid=42772085 polypeptide=Potri.009G103100.1.p locus=Potri.009G103100 ID=Potri.009G103100.1.v4.1 annot-version=v4.1 ATGATGAAATCAAAACAAACGTACGAAGAAACCAGGCAAAAGAGGATGGAGGAGAACAAGAAGAGAATGGAAGAGCTCAACCTCACAAAGCTCTCTCAAA GTCTCCTTTCCAAGCCATCTCCAGTGAAGAAAGCGAAGCCCAGAATTTCTAGGTCACCAGTGGCCTCGACTCCTGTTAGAAGGTCGAACCGGGTTGCAGA CAAGCCTCCCGTTAGCTATAAAGAAGTTCCAATTGAACCTTTGGCGAGACCCAGAAGGAGCTATCAAAGGAGGGATCTCTTGAATAGAGTTTATGCTTCT GATGAAGTAAGGATATATGCAATTCATAGGGCAGATCAAATTCAGTCAAGTTTGGGAGCTGATTTCCCAAGTTTTGTAAAACCTATGCTCCAATCACATG TCACTGGAGGGTTTTGGCTGGGTCTGCCGGTCCCCTTCTGTAAGGCTCACCTTCCCCATTATGATGAAATGATCACTTTGGAAGATGAAAATGGAGATGA ATCTGAAACGAAATACCTGGCTGGAAAAACTGGTCTTAGTGGGGGATGGAGAGGTTTTGCTATTGACCATGATCTAGTTGACGGAGATGCATTGGTATTC CAGCTTGTCAGCCCTACTAAATTTAAGGTGTACATTGTAAGGGCATATGATTCAGAAGACAATGAAGATCAGGAAAACACGAAAGACGATGAAGTCAAGG ATAACACGGAGGACAAGGAAGACGAGGGAAAAAGTGAAGAAAATGGCAAGGTTTCAGATGCCACAGATTTGAATAGGAGATACTCCAAACGAATCAGAGC AAGCAAAAAGTAG
AA sequence Show only first row Show all	>Potri.009G103100.1 pacid=42772085 polypeptide=Potri.009G103100.1.p locus=Potri.009G103100 ID=Potri.009G103100.1.v4.1 annot-version=v4.1 MMKSKQTYEETRQKRMEENKKRMEELNLTKLSQSLLSKPSPVKKAKPRISRSPVASTPVRRSNRVADKPPVSYKEVPIEPLARPRRSYQRRDLLNRVYAS DEVRIYAIHRADQIQSSLGADFPSFVKPMLQSHVTGGFWLGLPVPFCKAHLPHYDEMITLEDENGDESETKYLAGKTGLSGGWRGFAIDHDLVDGDALVF QLVSPTKFKVYIVRAYDSEDNEDQENTKDDEVKDNTEDKEDEGKSEENGKVSDATDLNRRYSKRIRASKK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103100 [exp]	0	1
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Potri.018G102100 [exp]	1.00	0.9328
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Potri.004G141500 [exp]	3.16	0.8708
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.014G143900 [exp]	6.70	0.8466
AT5G43530			Helicase protein with RING/U-b...		Potri.003G083400 [exp]	7.41	0.8642
AT5G42700	B3		AP2/B3-like transcriptional fa...		Potri.014G031600 [exp]	8.30	0.8657
AT5G43960			Nuclear transport factor 2 (NT...		Potri.010G065500 [exp]	10.00	0.7895
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	10.95	0.8582	CYCA3.1
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.007G028000 [exp]	12.04	0.8068
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.005G076800 [exp]	12.24	0.8301
AT2G36200			P-loop containing nucleoside t...		Potri.006G210700 [exp]	12.48	0.8619

Compare expression of checked genes

Potri.009G103100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.