Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 120 / 6e-31 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 117 / 3e-30 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 100 / 2e-23 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 48 / 5e-06 B3 REM19, RTV1 related to vernalization1 1 (.1) AT5G18000 47 / 2e-05 B3 VDD VERDANDI (.1) AT4G33280 47 / 2e-05 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT2G24645 46 / 3e-05 Transcriptional factor B3 family protein (.1) AT3G18990 45 / 5e-05 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G00260 44 / 0.0003 B3 MEE45 maternal effect embryo arrest 45, Transcriptional factor B3 family protein (.1) AT4G31690 44 / 0.0003 B3 REM9 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G141800 [exp] 764 / 0 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 292 / 1e-93 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 283 / 4e-90 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 265 / 1e-83 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 249 / 1e-77 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 129 / 3e-34 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 128 / 4e-34 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 129 / 6e-34 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031600 [exp] 120 / 3e-31 AT5G42700 156 / 1e-47 AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019873 [exp] 394 / 1e-133 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 266 / 4e-84 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10031022 [exp] 216 / 8e-65 AT3G19184 96 / 4e-22 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 200 / 2e-57 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10024689 [exp] 189 / 2e-54 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 179 / 7e-51 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 178 / 2e-50 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10032315 [exp] 169 / 3e-45 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10014043 [exp] 142 / 1e-37 AT3G19184 74 / 2e-14 AP2/B3-like transcriptional factor family protein (.1) Lus10014044 [exp] 125 / 4e-32 AT3G19184 250 / 2e-82 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G103400.2 pacid=42772305 polypeptide=Potri.009G103400.2.p locus=Potri.009G103400 ID=Potri.009G103400.2.v4.1 annot-version=v4.1 ATGGATGCCAAAGAGGACCAAAACACTTCCCCTAAACCTCAGCTTCCAATATCCAACCCAGTTCCCCTTAATACTTATCCCAGGATTAGGAGAAGGAAGC CAAATATGTCCAAGATAAAGCTGACCCAGATCCATGAGAAGTCTCCAGAACCTGAGTACAAGACTGGTCATGAACTCGTGTTGTATGATAAATCAGGGGA ATCAAGGGAGCCTAGAAGCCGCAAGCGAAAGAAAGACGCATTCAGTGTATTCTATGATAGTACTGAAACTAAGTCTCCTGCTATGGAACTGGCAGAGGAG ATTCGGACAAATTTAGAAGCAGCATATCCTAGCTTTGCAAAAACTTTGGTCCGGTCAAATGTGACTGTTGGGTTTTGGATGCATCTTCCCATGCGGTTCT GCAAAATGCATTTGCCAAAGAATGATACAACAGTTTTTCTGGAGAATGAAAGTGGGGAAGAATACATACTGAATTACATTGCAGAAAGAACAGCACTGAG TGGTGGATGGAAAGCATTCTGTGCTGCAAACAATTTACATGAGGGTGATGTTCTTGTTTTCCATTTAGTGAAACCTTCAAGATTTAAGGTGTACATTGTA AAAGGAAATGGTTCTTCCCAAGGAGATGGGGAGTTTGGCATTCCAAGTTCAGGTGCTTATGGAAAAGAAATCATCTCTGAGCCAGCTGAAAAAGATGTAA AAAGCAGTAAAAAGGCCGAGCCATTGAAGCTTCTTCCAGTTGGCCATCAGGAAGAGAATAATCAAGAGAATGGCCTGATCGCAGTGGAAAATAATAAAGG CTATGTTGCAGATCAATCTGAGAATGAAAGTGAAGATCGTGCCTCTGAAACTCTGCGAGTCATCAAACTTTCAGGACCCACTGTTGATTTTAATAATGTA AAAGGCATTGAGAATTTCAGAATTCTTTTAAACGGTTTTGCTATAGACTCTGAGCTCTCTGAACATCATCGGACTAAGTACTATGAGCTATGTCGCTCAC AGAGCTCATTTCTGCACAGCAATCTTCTCAACAGTATTAATCATAAATTGGCAGTTGAGATAATAATTGGGACCGTGGACATTTCAGAGGGGATTAGATC TTCAAAGCTTTCCAGCTCTCAAGCTGATTATGGAGTTTGGGACAAGACTTTGAAAGGATTTGAGCTGTTGGGCATGAAAGTTGGATTTTTGCGTGAGAGG TTGAGCCGGCTAATGAGTCTTGCTCTGGAATCAGAAGAGGCAATGGAATCAGAATGCAGAGAAGTTAGACTTGAGCAAGCTCGTGTAGATGAGGAGATGA AAAGCCTTGAATTGAGGCTTTTGAAATTGAAGGAGACAAGGGAAAGACTTGATGATGAGATGGAGATTCTGAAGGAGAATGCCGAGAAGCATGAGCTTAC GTTTCAGGAAGCGGTCAACGCCCCGTGGTAA
AA sequence Show only first row Show all	>Potri.009G103400.2 pacid=42772305 polypeptide=Potri.009G103400.2.p locus=Potri.009G103400 ID=Potri.009G103400.2.v4.1 annot-version=v4.1 MDAKEDQNTSPKPQLPISNPVPLNTYPRIRRRKPNMSKIKLTQIHEKSPEPEYKTGHELVLYDKSGESREPRSRKRKKDAFSVFYDSTETKSPAMELAEE IRTNLEAAYPSFAKTLVRSNVTVGFWMHLPMRFCKMHLPKNDTTVFLENESGEEYILNYIAERTALSGGWKAFCAANNLHEGDVLVFHLVKPSRFKVYIV KGNGSSQGDGEFGIPSSGAYGKEIISEPAEKDVKSSKKAEPLKLLPVGHQEENNQENGLIAVENNKGYVADQSENESEDRASETLRVIKLSGPTVDFNNV KGIENFRILLNGFAIDSELSEHHRTKYYELCRSQSSFLHSNLLNSINHKLAVEIIIGTVDISEGIRSSKLSSSQADYGVWDKTLKGFELLGMKVGFLRER LSRLMSLALESEEAMESECREVRLEQARVDEEMKSLELRLLKLKETRERLDDEMEILKENAEKHELTFQEAVNAPW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103400 [exp]	0	1
AT4G22860			Cell cycle regulated microtubu...		Potri.001G114400 [exp]	1.73	0.8672
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.012G021400 [exp]	2.00	0.8552
AT4G15030			unknown protein		Potri.001G266200 [exp]	6.00	0.8390
AT5G13240			transcription regulators (.1)		Potri.010G115800 [exp]	7.48	0.8424
AT4G01280	MYB		Homeodomain-like superfamily p...		Potri.002G163100 [exp]	8.48	0.8415
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.011G078300 [exp]	10.09	0.8548
AT5G41960			unknown protein		Potri.003G146100 [exp]	11.22	0.8412
AT2G43250			unknown protein		Potri.007G124700 [exp]	18.84	0.8437
AT5G49220			Protein of unknown function (D...		Potri.008G213300 [exp]	23.23	0.8282
AT1G21000			PLATZ transcription factor fam...		Potri.002G002200 [exp]	23.74	0.8426

Compare expression of checked genes

Potri.009G103400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.