Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ICK5.1,7
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49620 92 / 6e-23 ICN6, ICK5, KRP7 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) AT3G19150 75 / 1e-16 ACK1, ICK4, KRP6 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2) AT5G48820 71 / 6e-15 ICK6, KRP3 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) AT2G32710 62 / 1e-11 ICK7, ACK2, KRP4 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) AT3G50630 61 / 1e-11 ICK2, KRP2 KIP-related protein 2 (.1) AT3G24810 60 / 5e-11 ICK3, KRP5 kip-related protein 5, Cyclin-dependent kinase inhibitor family protein (.1) AT2G23430 47 / 1e-06 ICK1, KRP1 KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G142100 [exp] 307 / 1e-107 AT1G49620 91 / 7e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.002G242100 [exp] 71 / 4e-15 AT5G48820 177 / 6e-56 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.007G042300 [exp] 71 / 4e-15 AT2G23430 / KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1) Potri.005G137500 [exp] 70 / 1e-14 AT3G19150 50 / 2e-07 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2) Potri.017G054000 [exp] 67 / 2e-13 AT5G48820 127 / 3e-36 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.001G314000 [exp] 63 / 4e-12 AT5G48820 131 / 2e-37 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011862 [exp] 65 / 1e-12 AT5G48820 146 / 2e-43 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Lus10043139 [exp] 56 / 2e-09 AT2G32710 143 / 2e-41 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) Lus10032611 [exp] 52 / 4e-08 AT2G32710 139 / 1e-39 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02234 [poplar] [flax] CDI Cyclin-dependent kinase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.009G103600.1 pacid=42772015 polypeptide=Potri.009G103600.1.p locus=Potri.009G103600 ID=Potri.009G103600.1.v4.1 annot-version=v4.1 ATGGGAGAGAGCGCGAGGAATAGTAAGCGAATAGCTGAAACTGGAATTCTAGAATCTTCAGTCACAAGTTTCTCTAAGAAAATGAAATTTGATTTTGACG AGTTTAGCTTACCTTCGTTTAATTTCAAGCTCCAAGCTCATCTTTGCACCACTATGTCACCGGAAAATTTGATTTCTTCGGCGGCTTCATCGAATTCTGA TCGCTTTATAACCGGCAATTCCAGCTGTGGCGACTCTCCGGTTTCCTGCTGCTCCAGCAATGAATCGATCAAGGTTGTGAAGGACAGCTTGAGGTTTATA GATCTGGAGGCGAAGAGTTCCGAAACGGAAAGCTCGACGTGCAATGACAGGAAATTCAGTAGAGACACCACTCCTTCAAGCGAGTTTCACGGGATGTACT CGCCGGCAGCCGTGGAGAAGAAAGAGAATTCTCACAGGAGAAAGTCACCGGCTGTGAAAATGCCGAGTCAGGCTGAGATCGATGCGTTTTTCGCGGGGGC AGAGAGAGAGGAGCAGAAAAGATTTGCAGAGAAGTACAACTACGATGTTGTGAAGGATTTGCCAGTGGAGGGTCGCTACCAGTGGATTTGTTTGAAGCCA CAGAGGAAAATAGAGAATTGA
AA sequence Show only first row Show all	>Potri.009G103600.1 pacid=42772015 polypeptide=Potri.009G103600.1.p locus=Potri.009G103600 ID=Potri.009G103600.1.v4.1 annot-version=v4.1 MGESARNSKRIAETGILESSVTSFSKKMKFDFDEFSLPSFNFKLQAHLCTTMSPENLISSAASSNSDRFITGNSSCGDSPVSCCSSNESIKVVKDSLRFI DLEAKSSETESSTCNDRKFSRDTTPSSEFHGMYSPAAVEKKENSHRRKSPAVKMPSQAEIDAFFAGAEREEQKRFAEKYNYDVVKDLPVEGRYQWICLKP QRKIEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49620		ICN6, ICK5, KRP...	KIP-RELATED PROTEIN 7, Cyclin-...		Potri.009G103600 [exp]	0	1	Pt-ICK5.1,7
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.004G164000 [exp]	1.00	0.9570
AT5G53330			Ubiquitin-associated/translati...		Potri.012G033300 [exp]	3.87	0.9527
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Potri.011G024100 [exp]	5.47	0.9523
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.003G049100 [exp]	6.63	0.9270
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Potri.007G130100 [exp]	6.70	0.9473
AT3G16560			Protein phosphatase 2C family ...		Potri.008G207700 [exp]	7.54	0.9234
AT3G15780			unknown protein		Potri.001G192500 [exp]	7.74	0.9450
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.016G068700 [exp]	7.87	0.9316
AT5G20700			Protein of unknown function (D...		Potri.006G139200 [exp]	8.36	0.9297
AT5G09830			BolA-like family protein (.1)		Potri.001G309200 [exp]	8.36	0.9439

Compare expression of checked genes

Potri.009G103600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.