Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19170 1677 / 0 ATPREP1, ATZNMP presequence protease 1 (.1.2) AT1G49630 1673 / 0 ATPREP2 presequence protease 2 (.1.2.3) AT5G42390 45 / 0.0003 SPP stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G142300 [exp] 1905 / 0 AT3G19170 1723 / 0.0 presequence protease 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019877 [exp] 1622 / 0 AT3G19170 1557 / 0.0 presequence protease 1 (.1.2) Lus10014039 [exp] 1616 / 0 AT3G19170 1560 / 0.0 presequence protease 1 (.1.2) Lus10012075 [exp] 1526 / 0 AT3G19170 1484 / 0.0 presequence protease 1 (.1.2) Lus10027907 [exp] 1510 / 0 AT3G19170 1471 / 0.0 presequence protease 1 (.1.2) Lus10014038 [exp] 0 / 1 AT3G19170 56 / 5e-13 presequence protease 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [poplar] [flax] Peptidase_ME PF00675 [poplar] [flax] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [poplar] [flax] Peptidase_ME PF05193 [poplar] [flax] Peptidase_M16_C Peptidase M16 inactive domain CL0094 [poplar] [flax] Peptidase_ME PF08367 [poplar] [flax] M16C_assoc Peptidase M16C associated
Representative CDS sequence Show only first row Show all	>Potri.009G103700.1 pacid=42772744 polypeptide=Potri.009G103700.1.p locus=Potri.009G103700 ID=Potri.009G103700.1.v4.1 annot-version=v4.1 ATGGAGACAGCAATTCTCCTTCGCTCTTCCAACAAATTACTCCTTTTCCCTCGCTACTACACTCCCCGCAACTTCTTTCGCCTTTTCTCTTCCTCGTCTA AATCGCCACGCTCCTCGCCCTTCCCCCCTCGCAATCTCCACCGTCCGATTAACCCCCTCACCTCTCGCTCCCTCCTTCTCCGCCGCCGCTGTAGATTACT CCCTCCCTCTGCCACGCCATGCTCATCCTCTTTCCACTTCATCAAACACCACTTCTCTTCTTCCTCTCCTCACGCCATCGCCACCCGATGCTCTCCAGAT GTTAGCACCTTGCCTGACGAGGTTGCGGCGAAATATGGATTTGAGAAAGTATCAGAGGACTTTATCGGAGAGTGTAAATCAAGAGCTGTGTTACTCAAGC ATAAAAAAACTGGAGCTGAAGTCATGTCTGTTTCCAATGATGATGAGAATAAAGTTTTCGGCATTGTTTTTCGCACTCCGCCGAAGGATTCAACTGGGAT ACCACACATATTGGAACACAGTGTGTTATGTGGGTCAAGGAAGTACCCATTGAAAGAACCATTTGTTGAGTTATTGAAAGGAAGTCTGCATACTTTTCTG AATGCATTCACTTATCCTGATAGGACCTGCTACCCAGTTGCTTCCACGAACACAAAGGATTTCTATAACTTGGTTGATGTATACCTGGATGCTGTATTCT TTCCTAAATGTGTGGAGGATCACCATACTTTTCAACAGGAGGGTTGGCATCTTGAGCTCAACAACCCTTCAGAAGAAATATCTTATAAAGGAGTTGTTTT TAATGAAATGAAGGGTGTCTATTCCCAACCTGATAATATTCTAGGACGGACTGCTCAGCTGGCTCTTTTCCCAGACAATACCTATGGTGTTGATAGTGGA GGGGATCCTAAAGTTATTCCCAAATTGACGTTTGAGCAATTTAAGGAGTTTCACGGTAAATATTACCACCCCAGCAATGCCAGGATATGGTTTTATGGAG ATGACGATCCAACTGAGCGCTTACGCATCCTGAGTGAGTATCTAGATATGTTCGATGCAAGTTCAGCTTCAAATGAGTCAAGGATTGAGCAACAGAAATT CTTTTCAGAGCCTGTCAGGATTGTTGAGAAATATCCGGCTGGTGATGGCAGTGATTTGAAAAAGAAGCATATGGTATGCCTTAATTGGTTGCTAGCAGAT AAGCCCTTAGACTTGGAAACTGAGCTTACTCTTGGCTTTTTGGATCATCTTATGTTGGGAACCCCTGCTTCACCCTTGAGGAAAATCTTACTGGAAAGTG GTCTTGGAGATGCCATTGTTGGTGGTGGAGTTGAAGATGAGCTGCTTCAACCACAATTTAGTATTGGGTTGAAGGGTGTCTCCGAAGAAGACATTGAAAA GGTAGAAGAATTAGTCATGAGTACACTTAAGAAGTTAGCAGAGGAAGGATTTGAGACAGATGCCGTGGAGGCTTCCATGAATACAATCGAGTTTTCTCTC AGGGAAAACAACACTGGGTCATTTCCTCGTGGCTTATCACTGATGCTTCAATCCATTAGCAAATGGATATATGATATGGATCCCTTTGAGCCTTTAAAGT ATGAGAAACCCTTGATGGCCCTAAAAGCAAGAATAGCTGAGGAAGGTTCCAAAGCTGTTTTTTCTCCTTTAATTGAGAAATTTATCTTGAACAATCTTCA TCGTGTTACCATTGAAATGCAGCCTGATCCTGAGAAAGCTTCTCGTGATGAAGCTGCTGAAAGAGAAATTTTGGAGAAAGTAAAAGCAAGCATGACTGAA GAAGATCTTGCTGAGCTAGCACGTGCTACACAGGAGCTGAGATTAAAGCAGGAAACTCCTGACCCACCTGAAGCTTTAAGAAGTGTTCCAAGCCTCTCTT TGCTTGACATTCCCAAAGAACCTTTACATGTTCCCACTGAGGCTGGGGATATCAATGGAGTGAAAGTATTGAAGCATGACCTCTTCACAAATGATGTCCT TTATGCTGAAATTGTCTTTAATATGAGATCACTGAAGCAGGAACTTCTTCCTTTGGTGCCACTTTTCTGTCAGTCATTGCTTGAAATGGGCACAAAGGAT TTGACCTTTGTGCAACTTAACCAGCTGATTGGAAGAAAAACTGGAGGCATATCAGTTTATCCATTCACATCATCCATTCAAGGCAGGGAGGATCCATGCA GTCATATAATTGCTCAGGGTAAAGCCATGGCAGGTCGTGTTGAGGACTTATTCAACCTTGTTAATTGCGTTCTTCAAGAAGTCCAATTTACGGACCAGCA ACGCTTTAAGCAGTTCGTTTCCCAAAGCAAAGCAGGAATGGAGAACCGTTTAAGAGGCAGTGGCCACAGAATTGCAGCTACAAGAATGGATGCAAAGTTA AATGTTACAGGATGGATTTCCGAACAAATGGGTGGTGTAAGTTACTTGGAATTCCTGCAAGCTCTTGAGGAGAGAGTTGATCAAGATTGGGCTGGAGTTT CATCATCTCTTGAGGAAATTCGTACATCCTTGTTATCAAAGAATGGCTGCTTGATAAACATGACCGCTGATGGGAAAAATCTCACCAACTCAGAAAAGTA TGTTAGCAAGTTTCTTGATTTGCTTCCTAGCAAGTCTTCTGTTGAAGCTGCTGCTTGGAATGCTCGACTTTCTCCAGGAAATGAAGCTATTGTGATTCCT ACACAGGTTAATTATGTTGGCAAAGCTGCTAATATCTATGACACTGGTTATCAGCTTAATGGGAGTGCTTATGTTATCTCCAAATACATTAGCAATACAT GGTTGTGGGATCGTGTGCGTGTTAGTGGTGGGGCATATGGAGGGTTTTGTGATCTTGATACTCACTCAGGAGTGTTCTCCTTTTTATCCTATCGTGATCC CAACTTGTTGAAGACACTTGATGTATATGATGGAACTGGTGCTTTTCTACGTCAATTAGAAATGGACGACGATACTCTCTCCAAAGCAATAATTGGGACT ATTGGAGACGTGGATTCATACCAGCTGCCAGATGCCAAAGGTTATAGTAGTTTATTGCGGTATTTATTGGGAATCACAGAAGAAGAAAGGCAAAAGAGAC GTGAAGAAATATTGTCAACCAGTTTGAAAGACTTCAAGGAATTTGGGGAGGTAATCGAGGCTGTTAAAGATAAATGGGTTTCAGTTGCCGTGGCGTCTCC AGATGATGTTGATGATGCAAACAAGGAGCGTTCCAACTATTTTGATGTGAAGAAAGCCCTTTAA
AA sequence Show only first row Show all	>Potri.009G103700.1 pacid=42772744 polypeptide=Potri.009G103700.1.p locus=Potri.009G103700 ID=Potri.009G103700.1.v4.1 annot-version=v4.1 METAILLRSSNKLLLFPRYYTPRNFFRLFSSSSKSPRSSPFPPRNLHRPINPLTSRSLLLRRRCRLLPPSATPCSSSFHFIKHHFSSSSPHAIATRCSPD VSTLPDEVAAKYGFEKVSEDFIGECKSRAVLLKHKKTGAEVMSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLHTFL NAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVEDHHTFQQEGWHLELNNPSEEISYKGVVFNEMKGVYSQPDNILGRTAQLALFPDNTYGVDSG GDPKVIPKLTFEQFKEFHGKYYHPSNARIWFYGDDDPTERLRILSEYLDMFDASSASNESRIEQQKFFSEPVRIVEKYPAGDGSDLKKKHMVCLNWLLAD KPLDLETELTLGFLDHLMLGTPASPLRKILLESGLGDAIVGGGVEDELLQPQFSIGLKGVSEEDIEKVEELVMSTLKKLAEEGFETDAVEASMNTIEFSL RENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYEKPLMALKARIAEEGSKAVFSPLIEKFILNNLHRVTIEMQPDPEKASRDEAAEREILEKVKASMTE EDLAELARATQELRLKQETPDPPEALRSVPSLSLLDIPKEPLHVPTEAGDINGVKVLKHDLFTNDVLYAEIVFNMRSLKQELLPLVPLFCQSLLEMGTKD LTFVQLNQLIGRKTGGISVYPFTSSIQGREDPCSHIIAQGKAMAGRVEDLFNLVNCVLQEVQFTDQQRFKQFVSQSKAGMENRLRGSGHRIAATRMDAKL NVTGWISEQMGGVSYLEFLQALEERVDQDWAGVSSSLEEIRTSLLSKNGCLINMTADGKNLTNSEKYVSKFLDLLPSKSSVEAAAWNARLSPGNEAIVIP TQVNYVGKAANIYDTGYQLNGSAYVISKYISNTWLWDRVRVSGGAYGGFCDLDTHSGVFSFLSYRDPNLLKTLDVYDGTGAFLRQLEMDDDTLSKAIIGT IGDVDSYQLPDAKGYSSLLRYLLGITEEERQKRREEILSTSLKDFKEFGEVIEAVKDKWVSVAVASPDDVDDANKERSNYFDVKKAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.009G103700 [exp]	0	1
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Potri.001G072800 [exp]	2.44	0.9211	Pt-TOC75.2
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Potri.003G076500 [exp]	3.46	0.9157
AT1G78930			Mitochondrial transcription te...		Potri.007G001800 [exp]	5.83	0.9181
AT4G20020			unknown protein		Potri.003G015100 [exp]	8.24	0.9016
AT1G33350			Pentatricopeptide repeat (PPR)...		Potri.013G089400 [exp]	10.58	0.8881
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Potri.010G023100 [exp]	13.03	0.8821	Pt-CARB.1
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Potri.012G015400 [exp]	13.26	0.8814
AT3G15000			cobalt ion binding (.1)		Potri.001G393400 [exp]	14.38	0.8821
AT1G48570			zinc finger (Ran-binding) fami...		Potri.015G038200 [exp]	15.68	0.8908
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Potri.010G200200 [exp]	16.43	0.8678

Compare expression of checked genes

Potri.009G103700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.