Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47480 213 / 3e-67 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 206 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) AT2G03550 199 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 198 / 2e-61 ATCXE13 carboxyesterase 13 (.1) AT3G48690 192 / 3e-59 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 182 / 4e-55 ATCXE5 carboxyesterase 5 (.1) AT1G49650 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 170 / 8e-51 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 101 / 2e-24 ATCXE17 carboxyesterase 17 (.1) AT5G27320 99 / 2e-23 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G142800 [exp] 424 / 2e-150 AT1G19190 234 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104600 [exp] 315 / 2e-107 AT1G19190 219 / 1e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142900 [exp] 288 / 1e-96 AT1G19190 276 / 9e-92 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G105100 [exp] 244 / 1e-79 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G105000 [exp] 229 / 4e-74 AT2G03550 234 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 227 / 7e-73 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 226 / 1e-72 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 224 / 1e-71 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104900 [exp] 224 / 2e-71 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014036 [exp] 219 / 9e-70 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10027909 [exp] 217 / 7e-69 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 217 / 1e-68 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10019882 [exp] 214 / 7e-68 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10021743 [exp] 207 / 6e-65 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10042662 [exp] 197 / 3e-61 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10021745 [exp] 194 / 7e-60 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10014033 [exp] 187 / 2e-56 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10019884 [exp] 167 / 4e-50 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) Lus10019885 [exp] 141 / 4e-40 AT2G03550 173 / 1e-52 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.009G104700.2 pacid=42771319 polypeptide=Potri.009G104700.2.p locus=Potri.009G104700 ID=Potri.009G104700.2.v4.1 annot-version=v4.1 ATGGCATCAGCACCAAATAATGAAATCGCCCTCAAATTCAGGTTCTTTCAGGTCTACAAAGACGGCCGTGTTGAATTATTCTATCCACACAACAAAAAGA TCCCACCGTCCGATGATCCAGTCACTGGAGTCCAGTCCAAAGATGTTATCATCTCATCTGAACCTCAAGTCTCTGCCCGTATTTTCTTGCCAAAACTCAA AAACCCTAACCAAAAACTCCCCCTCTTACTATACATCCACGGAGGTGGATTCTCAATGAAATCTGCCTCTTCTCCTGCCTACCACAAGCTGTGCAACCAA GTTGCTGGTGAGGCCGACTTTATAGTTGTCTCTGTGGAGTATGGTCTCTTTCCTACCCGACCCATACCTGCATGCTATGAGGATTCGTGGGCTGTGCTCC AGTGGGTGGCATCACATGTTAATGGGAATGGACACGACCCATGGCTGAATGATCATGCTGATCTTGGGAAAGTTTTTATTGGGGGGGATAGTGCTGGAGG TAACATATCGCATACTTTGGCTTTTCGGGTCTGGTCAATCGGGTTGCCCCGAGGGGTGAAGGTTGTGGGGGTGGTTATGGTGCATCCCTTCTTTGGGGGT ACCAAGGATGATGAGATGTGGTTGTACATGTGCCCCACTAATAGTGGGCTGAATGATCCTAGGATGAATCCGGATGTAGAGGATCTTGCTAGGCTTGGGT GTGAGAGGATGTTGATCTTTGTAGCTGAGAAAGATTATTTGATTGTTGCAGCTAAGAATTATTATGAGAAGTTGAGAAAGAGTGGATGGAAGGGAACTGT TGAACTTGTCGAGAATGAAAAGGAAGACCACTGCTTCCATTTGCTTAATCTTGATAGTGACAAGGCTCAGGAAATGAGGTATAAGTTTGTTTCGTTTCTC AAACAAGACCAGTTCAATCTTTTGTAA
AA sequence Show only first row Show all	>Potri.009G104700.2 pacid=42771319 polypeptide=Potri.009G104700.2.p locus=Potri.009G104700 ID=Potri.009G104700.2.v4.1 annot-version=v4.1 MASAPNNEIALKFRFFQVYKDGRVELFYPHNKKIPPSDDPVTGVQSKDVIISSEPQVSARIFLPKLKNPNQKLPLLLYIHGGGFSMKSASSPAYHKLCNQ VAGEADFIVVSVEYGLFPTRPIPACYEDSWAVLQWVASHVNGNGHDPWLNDHADLGKVFIGGDSAGGNISHTLAFRVWSIGLPRGVKVVGVVMVHPFFGG TKDDEMWLYMCPTNSGLNDPRMNPDVEDLARLGCERMLIFVAEKDYLIVAAKNYYEKLRKSGWKGTVELVENEKEDHCFHLLNLDSDKAQEMRYKFVSFL KQDQFNLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.009G104700 [exp]	0	1
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Potri.013G040000 [exp]	1.41	0.8699
					Potri.007G065250 [exp]	3.00	0.8197
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G021300 [exp]	3.74	0.8542	ARR12.2
AT1G71865			unknown protein		Potri.019G086700 [exp]	5.65	0.8199
AT3G52040			unknown protein		Potri.009G056800 [exp]	6.24	0.8505
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Potri.018G090400 [exp]	15.87	0.8170
					Potri.017G147700 [exp]	17.14	0.8206
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Potri.005G160800 [exp]	20.09	0.8230
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Potri.010G160800 [exp]	21.90	0.8195
AT1G69700		ATHVA22C	HVA22 homologue C (.1)		Potri.005G152100 [exp]	25.69	0.8167

Compare expression of checked genes

Potri.009G104700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.