Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 273 / 8e-91 ATCXE13 carboxyesterase 13 (.1) AT3G48690 271 / 5e-90 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 266 / 4e-88 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 262 / 1e-86 ATCXE5 carboxyesterase 5 (.1) AT1G49650 264 / 2e-86 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 259 / 3e-85 alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 247 / 1e-80 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 144 / 2e-40 ATCXE17 carboxyesterase 17 (.1) AT3G63010 135 / 4e-37 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143100 [exp] 436 / 5e-156 AT1G49660 235 / 1e-76 carboxyesterase 5 (.1) Potri.004G142400 [exp] 331 / 2e-113 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 326 / 2e-111 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104900 [exp] 322 / 2e-109 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 317 / 6e-108 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104000 [exp] 314 / 5e-107 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104400 [exp] 308 / 2e-104 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1) Potri.004G142900 [exp] 303 / 7e-103 AT1G19190 276 / 9e-92 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142800 [exp] 298 / 6e-101 AT1G19190 234 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012073 [exp] 298 / 2e-100 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10019882 [exp] 296 / 1e-99 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10027909 [exp] 294 / 7e-99 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10014036 [exp] 272 / 2e-90 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10021743 [exp] 270 / 2e-89 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10014033 [exp] 265 / 1e-86 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10042662 [exp] 251 / 3e-82 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10021745 [exp] 242 / 1e-78 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10019885 [exp] 211 / 4e-67 AT2G03550 173 / 1e-52 alpha/beta-Hydrolases superfamily protein (.1) Lus10034068 [exp] 215 / 1e-66 AT1G47480 192 / 9e-58 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00135 [poplar] [flax] COesterase Carboxylesterase family
Representative CDS sequence Show only first row Show all	>Potri.009G105100.1 pacid=42772716 polypeptide=Potri.009G105100.1.p locus=Potri.009G105100 ID=Potri.009G105100.1.v4.1 annot-version=v4.1 ATGGATTCATCAAACTCCACAGGAATACTTCATGATTTCCCCCCCTTCTTTCGCGTTTACAGAAATGGCAAGGTAGAGAGGATCACAGCTGACGCAGAGA CTGTACGACCATCCAATGACCCTCATACAGGAGTCCAATCCAAAGACACTGTGGTCTCACAGGAAAACAGCCTGTCTGTCCGTCTCTTTATCCCCAAAAT CAAAGATCCAAGCCAAAAACTCCCTCTCCTGATATACATCCATGGTGGTGCCTTTTGCATTGAGTCTCCTTTCTCTTCCATGTACCATAACTACCTCACT AATTTAGCCCACCAAGCTAATGTTATTGCTGTGTCCGTTCAATACAGAAGAGCCCCAGAGCACCCTCTCCCTATAGCATATGATGATTCATGGGCTGCGA TCCAGTGGGTTGCTTCACATGTAAATGGTATTGGGGTTGAGTCCTGGCTAAATAAGCATGCAGATTTTGAGAGAACGTTTTTGGCTGGTGATAGTGCTGG TGCTAACATTGCACACAACATGACTGTTAGAGCTGGGGTTAATGGGCTATTCGGAGTCAAAACCGTTGGTATGGTTTTGGCGCACCCATTTTTTGGTGGC AAAGAGCCTGATTTTTTTAGTCCGGTGATAGAGTACATCTTTCCAGATGTTAAAATCTACGATGATCCTAGGATTAATCCTGCCGGTGCAGGTGGGGTGG AGCTGGCAAGCTTGGGGTGCAGCAGGGTGCTAATTTTTGTTGCTGGGAATGATGGCTTGAGAGAAAGGGGATACAGTTACTACGACGCATTGAAGAAGAG TGGGTGGAGTGGAGTGGTGGAGATTGTGGAGACTGAAGGAGAAGATCACGTTTTTCACTTGTTTAACCCCGATTGTGACAAGGCTGTGTTCATGATGAAG CAGGTTGTTTCCTTCATAAATCCAGTCCCTTAG
AA sequence Show only first row Show all	>Potri.009G105100.1 pacid=42772716 polypeptide=Potri.009G105100.1.p locus=Potri.009G105100 ID=Potri.009G105100.1.v4.1 annot-version=v4.1 MDSSNSTGILHDFPPFFRVYRNGKVERITADAETVRPSNDPHTGVQSKDTVVSQENSLSVRLFIPKIKDPSQKLPLLIYIHGGAFCIESPFSSMYHNYLT NLAHQANVIAVSVQYRRAPEHPLPIAYDDSWAAIQWVASHVNGIGVESWLNKHADFERTFLAGDSAGANIAHNMTVRAGVNGLFGVKTVGMVLAHPFFGG KEPDFFSPVIEYIFPDVKIYDDPRINPAGAGGVELASLGCSRVLIFVAGNDGLRERGYSYYDALKKSGWSGVVEIVETEGEDHVFHLFNPDCDKAVFMMK QVVSFINPVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.009G105100 [exp]	0	1
AT1G80170			Pectin lyase-like superfamily ...		Potri.001G171900 [exp]	3.00	0.8152
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G037900 [exp]	4.69	0.8282
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.011G006100 [exp]	9.79	0.7992
AT2G22900			Galactosyl transferase GMA12/M...		Potri.014G006100 [exp]	11.83	0.8123	GT6.2
AT1G01300			Eukaryotic aspartyl protease f...		Potri.014G099400 [exp]	12.36	0.7125
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.004G038100 [exp]	12.64	0.7580
AT4G00770			unknown protein		Potri.002G152700 [exp]	14.00	0.7671
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.004G189000 [exp]	16.24	0.7714	Pt-ATCSLA02.2
AT5G64860		DPE1	disproportionating enzyme (.1)		Potri.007G081400 [exp]	16.58	0.7445	DPE1.1
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Potri.009G169500 [exp]	21.33	0.7255	PtrEXPA21,ATEXPA20.1

Compare expression of checked genes

Potri.009G105100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.