Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15730 577 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G34420 562 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50620 449 / 2e-159 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143300 [exp] 658 / 0 AT2G15730 563 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G034300 [exp] 513 / 0 AT2G15730 491 / 7e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G042100 [exp] 501 / 1e-179 AT3G50620 509 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G136900 [exp] 490 / 2e-175 AT3G50620 532 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012072 [exp] 541 / 0 AT2G15730 510 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027910 [exp] 523 / 0 AT2G15730 507 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009348 [exp] 438 / 4e-155 AT3G50620 454 / 1e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10002971 [exp] 437 / 8e-155 AT3G50620 451 / 2e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042667 [exp] 407 / 8e-143 AT2G15730 405 / 4e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021749 [exp] 405 / 2e-142 AT2G15730 402 / 2e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G105200.1 pacid=42772535 polypeptide=Potri.009G105200.1.p locus=Potri.009G105200 ID=Potri.009G105200.1.v4.1 annot-version=v4.1 ATGGCTGACGATCCCTTCTTCTTCTGCTCCAAGGATTCTTTTCTTATAAAGGCTCCTAAGAAATCACCGTTGGCGTTAAGGATGGTTGTTTTAGTGTTTG CAATGGTGTGTGGTGTGTATATATGCTCAATTTGTCTTAAGCAAATTGGCATTCGTACGAATCCTGGATTTTTGAATGTTGAAGTGATTGAAAGGCCGTG TCCGGAACCTAATATTGAACCTTGGGAAATCCCTTATGTGCACTACCCGAAACCGATAACTTATAGCAGGGTTGAATGCAAGTGCAATCCTGTGCGGTAT TTTGCTATTCTGTCAATGCAGAGATCTGGGAGTGGATGGTTTGAGACACTGTTAAATAATCATACTAACATAAGCTCAAATGGGGAGATTTTCTCTGTCA AAGTTAGGCGGAGTAATGTTTCGACGATTACAGAGACCTTGGATAAAATTTATAATCTGGACTGGTTAAGTAGTGCTTCTAAGAACGAGTGTGCTGCTGC AGTTGGATTGAAGTGGATGCTTAATCAGGGTGTGATGCAACATCATGAAGAAATAGTGGAGTACTTCAAAACCAGGGGCGTTTCAGCTATATTTCTCTTC AGGAGAAATCTGTTACGCAGGATGGTTTCGATACTTGCAAATTCTTATGATCGAGAGGTGAAGCCATTAAATGGCACCCATAAGTCTCATGTTCATTCTC CTCGTGAGGCAGAGATACTAGCTAAATACAAGCCTTTGATCAATACAACATTGCTGATATCCAATCTGAAGCAAGTAGAAGATACAACTGCCAAAGCCTT AGAGTACTTCAAGAGTACGAGGCACATAATTCTTTACTATGAGGATGTAGTCAAGAACCACACGAAATTATTAGATGTTCAAGATTTTCTGAAGGTTCCA CAAAGAGAACTTAAGAGTCGTCAAGTAAAGATACACAAAGGATCCCTATCTAACTATGTTGAGAACTGGGATGAAGTCCAAAAGTCTCTGAAAGGAACGC ACTATGAAAACCTCCTAACTGGAGACTACCGAAAGTAA
AA sequence Show only first row Show all	>Potri.009G105200.1 pacid=42772535 polypeptide=Potri.009G105200.1.p locus=Potri.009G105200 ID=Potri.009G105200.1.v4.1 annot-version=v4.1 MADDPFFFCSKDSFLIKAPKKSPLALRMVVLVFAMVCGVYICSICLKQIGIRTNPGFLNVEVIERPCPEPNIEPWEIPYVHYPKPITYSRVECKCNPVRY FAILSMQRSGSGWFETLLNNHTNISSNGEIFSVKVRRSNVSTITETLDKIYNLDWLSSASKNECAAAVGLKWMLNQGVMQHHEEIVEYFKTRGVSAIFLF RRNLLRRMVSILANSYDREVKPLNGTHKSHVHSPREAEILAKYKPLINTTLLISNLKQVEDTTAKALEYFKSTRHIILYYEDVVKNHTKLLDVQDFLKVP QRELKSRQVKIHKGSLSNYVENWDEVQKSLKGTHYENLLTGDYRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15730			P-loop containing nucleoside t...		Potri.009G105200 [exp]	0	1
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.006G207700 [exp]	1.00	0.8971
AT5G41760			Nucleotide-sugar transporter f...		Potri.001G094600 [exp]	3.74	0.8602
AT2G25270			unknown protein		Potri.006G258700 [exp]	6.00	0.8914
					Potri.012G060751 [exp]	6.63	0.8684
AT1G69420			DHHC-type zinc finger family p...		Potri.008G091700 [exp]	6.92	0.8952
AT1G32860			Glycosyl hydrolase superfamily...		Potri.011G152400 [exp]	8.36	0.8772
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.002G158400 [exp]	9.48	0.8843
AT2G33640			DHHC-type zinc finger family p...		Potri.005G254432 [exp]	9.79	0.8656
AT5G14390			alpha/beta-Hydrolases superfam...		Potri.001G340000 [exp]	10.24	0.8576
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	11.31	0.8864

Compare expression of checked genes

Potri.009G105200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.