Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19130 479 / 4e-168 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 452 / 2e-157 ATRBP47A RNA-binding protein 47A (.1) AT1G47500 403 / 3e-138 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 403 / 4e-138 ATRBP47C RNA-binding protein 47C (.1.2) AT1G11650 348 / 4e-117 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G27000 347 / 1e-116 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G19350 339 / 3e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G54900 337 / 4e-113 ATRBP45A RNA-binding protein 45A (.1) AT3G14100 142 / 1e-37 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 142 / 1e-37 UBP1A oligouridylate-binding protein 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143400 [exp] 616 / 0 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 464 / 5e-162 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 454 / 2e-158 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.009G054400 [exp] 373 / 2e-126 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G017200 [exp] 367 / 2e-124 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G423400 [exp] 366 / 9e-124 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G138400 [exp] 364 / 3e-123 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G139300 [exp] 139 / 6e-37 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 138 / 2e-36 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012070 [exp] 495 / 8e-175 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10014029 [exp] 478 / 3e-169 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10012071 [exp] 470 / 4e-166 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10019889 [exp] 453 / 3e-159 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10021754 [exp] 442 / 2e-153 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10027911 [exp] 432 / 3e-151 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10031844 [exp] 374 / 4e-127 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 373 / 9e-127 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018345 [exp] 365 / 4e-124 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043106 [exp] 273 / 5e-87 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.009G105300.1 pacid=42770820 polypeptide=Potri.009G105300.1.p locus=Potri.009G105300 ID=Potri.009G105300.1.v4.1 annot-version=v4.1 ATGCAGCAAAGCAACGGTCCTGATCAAAACCCATCTCCACAACACCAACCCCATCATCCCCATCAACAACAGTGGGTCCCACACATGCAGCAGCAGCAGC AACAGCAACAGCAGCAACAGCAACAGTGGATGGCAGCTATGCAGTATCCAGCTGCTGCTATGGTGATGATGCAGCAGCAGATGATGATGTATCCTCAACA ACAACATCACCATTACATGGCTTACTATCATCAACAACAACAGCAGTATCAAAAACAGCAGCAGCAGTATCATCAAAAGCAGCAGAAACAACTACAACAA CAGGGATCTAATGAGGAGGCTAAAACTGTATGGGTTGGTGACTTGCTTCATTGGATGGACGAGACCTACTTGCATAATTGCTTCTCTCATACTGGAGAGG TTTCTTCAGTAAAGATTATTCGCAATAAGCAAACTGGTCAGCTGGAAGGGTATGGATTCGTTGAGTTTTATTCACATGCAGCAGCTGAGAAAGTCTTGCA GAGCTATAGTGGCTCTATGATGCCAAATACAGATCAACCTTTTCGTCTCAACTGGGCAAGTTTTGCAGGTGAAAGGCGAGCTGATGCTGGTTCTGATCTG TCTATATTTGTCGGAGATTTGGCTGCGGACGTGACTGATGCAATGTTACAGGAAACCTTTGCTACCAAATATGCATCTGTCAAGGGAGCAAAGGTTGTCG CTGATTCTAATACTGGCCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGGGGATGAAAATGAGAAGACAAGGGCCATAACTGAGATGAATGGTGCTTACTG CTCAAGTAGGCCTATGCGGATAGGTGTTGCCACCCCTAAAAAGCCATCTGCATATCAACAGCAGTATTCTTCACAAGCTTTAGTATTAGCTGGTGGACAT GCATCAAATGGTACAATGGCACAAGGATCACAATCTGATGGGGACTCTAACAATACAACTATATTTGTGGGAGGAATTGACTCTGATGTCACTGATGAGG ATCTCAGGCAGCCGTTTTCCCAATTCGGTGAAGTTGTTTCTGTGAAAATGCCAACTGGAAAAGGATGTGCATTTGTACAATTTGCTAATAGAAAGAATGC GGAGGATGCACTGCAGAGTTTGAATGGAACAACAATTGGCAAGCAAACAGTTCGCCTTTCCTGGGGTCGCACTCCAGCAAACAAGCAGTGGAGAGGGGAT CATGGTAATCAATGGCACGGGGCATATTTTGGAGGGCAAGGCTATGCCGGGTATGGATATGCTATGCCACCAAATCAGGACCCAGGCATGTACGTTGCAG CTGCAGCTTCTGGGGCTTCTTAA
AA sequence Show only first row Show all	>Potri.009G105300.1 pacid=42770820 polypeptide=Potri.009G105300.1.p locus=Potri.009G105300 ID=Potri.009G105300.1.v4.1 annot-version=v4.1 MQQSNGPDQNPSPQHQPHHPHQQQWVPHMQQQQQQQQQQQQQWMAAMQYPAAAMVMMQQQMMMYPQQQHHHYMAYYHQQQQQYQKQQQQYHQKQQKQLQQ QGSNEEAKTVWVGDLLHWMDETYLHNCFSHTGEVSSVKIIRNKQTGQLEGYGFVEFYSHAAAEKVLQSYSGSMMPNTDQPFRLNWASFAGERRADAGSDL SIFVGDLAADVTDAMLQETFATKYASVKGAKVVADSNTGRSKGYGFVRFGDENEKTRAITEMNGAYCSSRPMRIGVATPKKPSAYQQQYSSQALVLAGGH ASNGTMAQGSQSDGDSNNTTIFVGGIDSDVTDEDLRQPFSQFGEVVSVKMPTGKGCAFVQFANRKNAEDALQSLNGTTIGKQTVRLSWGRTPANKQWRGD HGNQWHGAYFGGQGYAGYGYAMPPNQDPGMYVAAAASGAS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Potri.009G105300 [exp]	0	1
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.003G222700 [exp]	1.41	0.8986
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.001G002000 [exp]	2.44	0.8475
AT3G59800			unknown protein		Potri.017G010100 [exp]	3.16	0.8486
AT1G50920			Nucleolar GTP-binding protein ...		Potri.001G258900 [exp]	5.19	0.8034
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Potri.019G013100 [exp]	11.09	0.7488	Pt-GIF1.1
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	11.31	0.8328
AT3G56680			Single-stranded nucleic acid b...		Potri.016G032500 [exp]	11.83	0.7966
AT1G11650		ATRBP45B	RNA-binding (RRM/RBD/RNP motif...		Potri.004G017200 [exp]	13.56	0.8058
AT5G51940		NRPE6A, NRPD6A,...	RNA polymerase Rpb6 (.1)		Potri.012G136900 [exp]	16.94	0.8085
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	17.88	0.8217

Compare expression of checked genes

Potri.009G105300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.