Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15760 100 / 7e-24 Protein of unknown function (DUF1645) (.1) AT2G26530 76 / 4e-15 AR781 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) AT3G62630 65 / 2e-11 Protein of unknown function (DUF1645) (.1) AT3G27880 43 / 0.0002 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143500 [exp] 429 / 3e-150 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1) Potri.014G034900 [exp] 150 / 8e-42 AT2G26530 174 / 1e-51 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.002G128500 [exp] 110 / 4e-27 AT2G26530 191 / 4e-58 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.013G010400 [exp] 64 / 6e-11 AT3G62630 199 / 7e-60 Protein of unknown function (DUF1645) (.1) Potri.005G019600 [exp] 62 / 2e-10 AT3G62630 218 / 5e-67 Protein of unknown function (DUF1645) (.1) Potri.010G041300 [exp] 42 / 0.0003 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019892 [exp] 197 / 1e-59 AT2G15760 202 / 2e-62 Protein of unknown function (DUF1645) (.1) Lus10014025 [exp] 194 / 2e-58 AT2G15760 203 / 8e-63 Protein of unknown function (DUF1645) (.1) Lus10032766 [exp] 147 / 1e-40 AT2G26530 193 / 4e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10012069 [exp] 117 / 5e-30 AT2G15760 171 / 4e-51 Protein of unknown function (DUF1645) (.1) Lus10027912 [exp] 103 / 1e-24 AT2G15760 166 / 1e-48 Protein of unknown function (DUF1645) (.1) Lus10021757 [exp] 100 / 2e-23 AT2G26530 194 / 2e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10006479 [exp] 71 / 2e-13 AT2G26530 133 / 4e-37 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10032881 [exp] 68 / 1e-12 AT2G26530 129 / 2e-35 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10020690 [exp] 65 / 3e-11 AT3G62630 232 / 1e-72 Protein of unknown function (DUF1645) (.1) Lus10029855 [exp] 64 / 7e-11 AT3G62630 236 / 2e-74 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [poplar] [flax] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Potri.009G105400.1 pacid=42771303 polypeptide=Potri.009G105400.1.p locus=Potri.009G105400 ID=Potri.009G105400.1.v4.1 annot-version=v4.1 ATGGAAATGGAAATTGTGATGCCAGTGCCACCTGTGGACTTCAACTTTGATAGCACTTGTTCTTCTCCTTACATGACTGCCCCTTCAAGTCCTCAAAGAT TTGGCAACTTACTCTTTAGTGCCCCAACAAGCCCCACTCGTATGTCCTCTTTCTATAGGGAGCTTAATGATATAACTCTTTCTACAAATTCATCATCTAC AATCCCTTTTGACTGGGAAAAGAAGCCTGGAACTCCCAAATCCAAGAACCAAAGTGAAGACAACAACAAAAATGATGGTGATCTTGATGATTATAATGAG GATTTTGAGTTCGACTTTAGTGGTCAATTAGAAAGAACTTCTTTATCAGCTGAAGAACTATTTGACGGTGGAAAGATCAAGCCTTTGAAGCCACCACCTG GCTATGATTCTTCAGTTTCTTCTCCAAGGTCTCCAAGATCACCTAGATCAAGAGCCACAAAAAAGAAGGAATTTGACCCCTTTCAAGCTGCCATTGAAGA GACATGTAGAGGAGAAGTTAAACTACAAATTAATCAACAAGGCCAAGCTCCCCATCAACGTGGAAGAGGCAGAAGCTGTGGTAGTGGTTCCTCATTTTCA GGTTCTATACGTAAAGGAAGCAGATCTTTATCTCCTTTAAGAGTCTCAGACATCACGTTTCATCAAGAAGAGAATTCCCAGAATTCAAATAATATTTCTT CTACAGCAAGCACCCCTAAATCATCTTACACGTCTTCTATCTTATCCGCAATATCATTCACATCGAAAAGGTACAAGAAATGGAAGCTGAAGGACTTATT GCTATTCAGAAGTGCATCAGAAGGAAGCAGGACGACAAGCTGCAATGACCCGTTAACAAAATATTCAGTCTTGTCCAAAAAAGAAGTGGCAGAGGATGTC AAGAATTCTAGCTTTCGGTCTACAGATAGTATAGGAAGTTCCAGGAGGAGATCAGGGCCTATATCAGCTCATGAGGTGCATTACACAGTGAACAGGGCGG TTTCAGAGGAAATGAAAAGGAAAACGTTCTTACCTTACAAGCAAGGTTTATTGGGGTGCTTGGGATTCAATCGGGCTGCAAGTGTGCATGAGATCTCTAG AGGTGTTAGGTCCTTGACACGTGGATGA
AA sequence Show only first row Show all	>Potri.009G105400.1 pacid=42771303 polypeptide=Potri.009G105400.1.p locus=Potri.009G105400 ID=Potri.009G105400.1.v4.1 annot-version=v4.1 MEMEIVMPVPPVDFNFDSTCSSPYMTAPSSPQRFGNLLFSAPTSPTRMSSFYRELNDITLSTNSSSTIPFDWEKKPGTPKSKNQSEDNNKNDGDLDDYNE DFEFDFSGQLERTSLSAEELFDGGKIKPLKPPPGYDSSVSSPRSPRSPRSRATKKKEFDPFQAAIEETCRGEVKLQINQQGQAPHQRGRGRSCGSGSSFS GSIRKGSRSLSPLRVSDITFHQEENSQNSNNISSTASTPKSSYTSSILSAISFTSKRYKKWKLKDLLLFRSASEGSRTTSCNDPLTKYSVLSKKEVAEDV KNSSFRSTDSIGSSRRRSGPISAHEVHYTVNRAVSEEMKRKTFLPYKQGLLGCLGFNRAASVHEISRGVRSLTRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15760			Protein of unknown function (D...		Potri.009G105400 [exp]	0	1
AT1G20100			unknown protein		Potri.005G242400 [exp]	2.44	0.7737
AT5G27920			F-box family protein (.1)		Potri.005G022600 [exp]	4.24	0.7593
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.011G057000 [exp]	6.92	0.8086
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134700 [exp]	10.48	0.6841
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Potri.001G042400 [exp]	12.12	0.7794
AT1G14060			GCK domain-containing protein ...		Potri.013G099100 [exp]	16.85	0.7025
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.001G044500 [exp]	19.28	0.7946	Pt-WRKY40.1
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.009G034800 [exp]	21.33	0.7703
AT5G11000			Plant protein of unknown funct...		Potri.018G021800 [exp]	23.23	0.6550
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.015G023200 [exp]	27.82	0.6747

Compare expression of checked genes

Potri.009G105400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.