Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49590 222 / 1e-72 C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT3G54230 41 / 0.0005 SUA suppressor of abi3-5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G081800 [exp] 45 / 3e-05 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.017G138500 [exp] 43 / 0.0002 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.017G138401 [exp] 42 / 0.0002 AT3G54230 166 / 1e-45 suppressor of abi3-5 (.1.2) Potri.001G205700 [exp] 41 / 0.0005 AT5G09390 280 / 3e-91 CD2-binding protein-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027913 [exp] 255 / 1e-85 AT1G49590 278 / 5e-95 C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10012068 [exp] 265 / 3e-82 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010955 [exp] 43 / 0.0002 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF06220 [poplar] [flax] zf-U1 U1 zinc finger
Representative CDS sequence Show only first row Show all	>Potri.009G105500.1 pacid=42771535 polypeptide=Potri.009G105500.1.p locus=Potri.009G105500 ID=Potri.009G105500.1.v4.1 annot-version=v4.1 ATGACGGAGTATTGGGTAAGCCAAGGCAACAAATGGTGCGATTTTTGCAAGATATTTATATCAAACAACCCTACAAGTATCCGAAACCATGAACTTGGCC AACGCCACAAAGATAATGTCGCTAAAAAGCTTGATTCTATGCGGAAAGATAACATCGCCAAGGAGAAACAGCAGAAAGAAGCTGCCCGTGCTCTCGAGCA GATCGAAGCTAAAGCAAATCGGAGTTATCAAAAGGATGTGGCGAATCTTAAGGAGGCAAGTAGTCTTCGTGCATTGGATATACAAGAAGATGGTCAAGAG AAGTGGGATTATGACAGCACTTCAGGCTATTATTACAATCAAAGCAATGGTTTACACTATGATCCAAACTCAGGCTTTTACTATTCTGATGCTATAGGCA AGTGGGTGACGCAAGAAGAAGCGTATGCTGCGGTTCGGATTTCATCAGGCTCCAGGAATAAAGAATCCAGTTTTAAAAAGCCTTTGCCAGCATCAGCTGT CAGTTCGGTAAAAGAAAATAAAGTCGCTGCTCAAAGTGGCCCTCCACCTGGTCCGGTAGTTTCAGCTTCTTTAAATCCTAGAAGATCTGTTAAAGGCGCT CCTTCAAAATTTGCTGTTAACAAGAGGAAGAGGCCAGATGAAAAGCCAAAGGCTGTATCTGTAGAAGAAAAGGCGGCACTTAAAGCTAGGGAAGCTGCAA GGAAGAGGGTCGAGGAGAGGGAGAAATCATTGCTTGGCCTTTACCAACACTGA
AA sequence Show only first row Show all	>Potri.009G105500.1 pacid=42771535 polypeptide=Potri.009G105500.1.p locus=Potri.009G105500 ID=Potri.009G105500.1.v4.1 annot-version=v4.1 MTEYWVSQGNKWCDFCKIFISNNPTSIRNHELGQRHKDNVAKKLDSMRKDNIAKEKQQKEAARALEQIEAKANRSYQKDVANLKEASSLRALDIQEDGQE KWDYDSTSGYYYNQSNGLHYDPNSGFYYSDAIGKWVTQEEAYAAVRISSGSRNKESSFKKPLPASAVSSVKENKVAAQSGPPPGPVVSASLNPRRSVKGA PSKFAVNKRKRPDEKPKAVSVEEKAALKAREAARKRVEEREKSLLGLYQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49590			C2H2 and C2HC zinc fingers sup...		Potri.009G105500 [exp]	0	1
AT1G53490			RING/U-box superfamily protein...		Potri.001G383900 [exp]	15.58	0.7586
AT5G53310			myosin heavy chain-related (.1...		Potri.015G023400 [exp]	24.00	0.7844
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.014G196200 [exp]	34.08	0.7645
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Potri.003G130000 [exp]	45.03	0.7575
					Potri.006G233301 [exp]	46.66	0.7501
AT4G35870			early-responsive to dehydratio...		Potri.007G063700 [exp]	73.48	0.6677
AT5G25360			unknown protein		Potri.001G192700 [exp]	86.00	0.6872
AT2G37370			unknown protein		Potri.016G080900 [exp]	129.35	0.6854
AT2G18670			RING/U-box superfamily protein...		Potri.018G098100 [exp]	130.65	0.6867
AT5G20120			unknown protein		Potri.018G066700 [exp]	133.49	0.6903

Compare expression of checked genes

Potri.009G105500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.