Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39710 1022 / 0 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 337 / 1e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 335 / 8e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 327 / 8e-101 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62930 312 / 2e-96 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 309 / 2e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 305 / 9e-94 RPF2 rna processing factor 2 (.1) AT1G62910 305 / 1e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 301 / 6e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G15630 302 / 9e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 362 / 3e-114 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 343 / 2e-107 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 337 / 6e-106 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 335 / 3e-105 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 332 / 6e-104 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G069600 [exp] 333 / 3e-103 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 330 / 3e-103 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 327 / 2e-102 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 325 / 1e-101 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012068 [exp] 1077 / 0 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 1076 / 0 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 1065 / 0 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 345 / 1e-107 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 329 / 8e-101 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 323 / 2e-100 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10039056 [exp] 325 / 1e-99 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 324 / 5e-98 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 318 / 7e-96 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 309 / 1e-95 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.009G105600.1 pacid=42772269 polypeptide=Potri.009G105600.1.p locus=Potri.009G105600 ID=Potri.009G105600.1.v4.1 annot-version=v4.1 ATGTCCCTACCCAGACTCCAAATCTACCGTTCTTTGTCTACTCTCTCTTCACCCACAGATGCCCTTTTAGCAGAAAAAGCCCTAACCCTCCTCAAACGCT ATCCATACCACTTAAATTCGATATCTTCCCAAATAACCCCTGAATTAGCTTCATATTTGCTTCTCCAAACCCAAAATGATCGAACCCTGACCCTCAAATT CATTAACTTTGCTAAACCCCACCAATTCTTTAACCCCCACTGTAAATGCATTGCCCTTCACATTTTAACCAAATTCAAGCTCTATAAAACAGCCCAAAAT CTAGCTCAGGACTTGGCTGAAAATTCTGTTGATGAGAAGGGTAATTATTTCTTTCAATGTCTTAAAGATACTTACTTTATGTGTAATTCAAGCTCTGCTG TTTTTGATTTAGTGGTAAAATCTTGTTCTTACTTAAATTTTATTGAAAAGGCTTTGAATATTGTTGATTTAGCCAAGCTTAATGGGTTTATGCCTGGTGT TTTGTCATACAATGCAATTTTGGATTCAATAGTTAGGTGTAGAAAACCAGTTATATTTGCTGAGAAAGTGTACAGGGAAATGATTGCAAGTGGGGTTTCT TTGAATGTATTCAGTTATAATATTTTGATAAGGGGTTTCTGTGCAGCGGGGAATTTGGAAATGGGGTTGAGGTTTTTTGAAGAAATGGAGAGAAATAGAT GTTTGCCGAATGTGGTTACATATAATACTGTAATTGGTGCATATTGTAAGTTGAAGAGGATAGATGAGGCGTTTAAATTGTTGAGGTCGATGGGGTTGGA AGGTTTGGAGCCAAACTTGCTTACGTATAATATGGTGATTAATGGATTGTGCAGAGTAGGGAGGATAGAGGAGACAAGTGGGGTTCTTGCGGAGATGGAT CGGAATGGTTTTGCTCCTGATGGGGTGACTTATAATACACTTGTAAATGGATATTGCAAAGTGGGTAATTTTCACCAAGCGCTTGTTTTGCATTCAGAGA TGTTGAGGAATGGATTGCCCCCTGATGTTGTTACATATACTTCGTTGATTAATACAATGTGTAAGGCTGGGAATTTGAACCGAGCAATGGAGTTTTTTGA TCAGATGCATGTTAGAGGTCTTCGTCCGAATGGAGTAACGTACACATCATTGATCAATGGGTTTTCACAAAAGGGATTCATGGATGAGGCTTACCGTATT TGGGATGAAATGATTAGAAGTGGTTTCCCGCCCACAATTGTAACTTATAATGCCCTTTTAAATGGACATTGTGTTTCAGGAAGGATGGAGGAGGCCATAG GATTGTTACGAGGTATGGAGGGTAAAGGTTTGTCCCCAGATGTTGTAAGTTACAGTACTATCATAGCTGGATTTTGTCGATACCAAGAGTTGGACAGGGC ATTTCAAATGAATGCGGAGATGGTTGAGAAGGGTGTTTCACCTGATGCCATTACCTACTCATCGCTTATCCAAGGTCTCTGTGAGCAGAGAAGACTGAAT GAAGCTTGTGATCTGTTCCAAGAGATGTTGAATAAGAGTCTGCTTCCTGATGAATTCACTTATACAAGCTTGATTAATGGTTATTGTAAAGAAGGAGATT TGAATGAGGCTCTTAATTTGCATGATGAAATGATAAAAAAGGGCTTTCTACCGGATACAGTCACCTACAATGTGCTTATTAATGGACTAAACAAGCAAGC TCGAACAAGGGAGGCAAAGAGGCTCCTGCTTAAGTTGTTTTACGACGAGTCTATCCCAAATGGCATAACATATGATACACTGATAGAAAGTTGTAGTGAT ATTGAATTTAAGAGTGTCGTGGCTCTCATAAAGGGATTCTGTATGAAGGGTTTGATGAACGAAGCAGATCAAGTTTTTGAATCCATGATTAAGAGAAACC AGAAGCCAAATGAAGCGGTTTATAATGTCATTATACATGGTCATTGCAGAGATGGAAATGTTCATAAGGCACATAAACTCTACAAGGAAATGGTTGATTT TGGTTTCATTCCTCATACTGTGACCATCATTGCTCTGGTTAAGGCACTTTACAGTGAAGGGATGGACGAGCAGTTGAATCTAGTTATAAGGGACATATTG AGAAGCTGCAAGCTTTCAGATGCAGAGCTTTCTAAAGCACTTGTTCAGATCAACCATAAAGAAGGGAACATAGATGCAGTTTTTAATTTGCTTACTGAAA TGGCCAAGGATGGCTTTCTTCCAAGCGGTGCAGCTCCTGCCAATGCTGGCCAGTAG
AA sequence Show only first row Show all	>Potri.009G105600.1 pacid=42772269 polypeptide=Potri.009G105600.1.p locus=Potri.009G105600 ID=Potri.009G105600.1.v4.1 annot-version=v4.1 MSLPRLQIYRSLSTLSSPTDALLAEKALTLLKRYPYHLNSISSQITPELASYLLLQTQNDRTLTLKFINFAKPHQFFNPHCKCIALHILTKFKLYKTAQN LAQDLAENSVDEKGNYFFQCLKDTYFMCNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVS LNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMD RNGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRI WDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLN EACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSD IEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDIL RSCKLSDAELSKALVQINHKEGNIDAVFNLLTEMAKDGFLPSGAAPANAGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Potri.009G105600 [exp]	0	1
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Potri.001G129700 [exp]	1.41	0.9035
AT5G49840			ATP-dependent Clp protease (.1...		Potri.004G229400 [exp]	1.73	0.9227
AT5G45190			Cyclin family protein (.1.2)		Potri.007G067100 [exp]	4.58	0.8901
AT4G08940			Ubiquitin carboxyl-terminal hy...		Potri.002G097900 [exp]	5.00	0.8865
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.019G087900 [exp]	5.91	0.8774	SDG907,SUVH3.1
AT5G20200			nucleoporin-related (.1)		Potri.018G129900 [exp]	6.92	0.8642
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.013G123100 [exp]	8.36	0.8646
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.004G020300 [exp]	8.48	0.8878
AT3G46210			Ribosomal protein S5 domain 2-...		Potri.006G239100 [exp]	8.66	0.8590
AT2G15560			Putative endonuclease or glyco...		Potri.004G140400 [exp]	8.66	0.8644

Compare expression of checked genes

Potri.009G105600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.