Plant FIBer expression Database

Potri.009G105900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15803 zf-SCNM1 Zinc-finger of sodium channel modifier 1
PF15805 SCNM1_acidic Acidic C-terminal region of sodium channel modifier 1 SCNM1
Representative CDS sequence
>Potri.009G105900.2 pacid=42771075 polypeptide=Potri.009G105900.2.p locus=Potri.009G105900 ID=Potri.009G105900.2.v4.1 annot-version=v4.1
ATGAGTGTTTTTGGTGGAGATAGCTGGGCAAGAGAAGCACAATACAGGAAAAGAAGAGTTGATGATCTTGTAATAGACGGACTTGATGGGTCTTCTCACA
AGAAGCTATCTAGTGGAAAATACGCATGTCTTGTTTGCCCTCACAATCCCGTCCTCGAATCTCCCCTCGCGCTCTCTATGCATTGTAAGGGATCCCGACA
TATTGCTGCGGAGTCCAAGCTGAAGGAAAAAGAATTGATGAGACAAAGTGAGATTAATAAAAGATTAGCGTTATCAGAATCTGATGTTAGGCCTGCTAAT
CCAAGTGCTTTGAACAAAAATACCAAGTTAGTGAGTAAGCCATTGATTGAAAAGACAAAGAAGGCTGCTACCGAGATACTTGGCAAAGGAACTGCCCTGT
TGAGTTCCAAAAATCAAAACTGTGATCTGAAATTGAGCGTGGGATACGTAAATATTATGAATGTGGTGACCAAAATCTGCGAAAACAGCTCATGTCCGGA
AGTAATAGCATCTGAGAAGATGCTTGTGCAACAGCACTTGGATTTTAGGGAGCGGCGAGAGAGGGAGCTGAAGTTCACTGAAGCGGGTTGGAAGCGTGAT
TGCCATGGAAGATGGTTTAGAGATGAAAATGTGGAATTTGATTCTGATGAAGAAGATCCGAATGTCTGTCTTGGTTAA
AA sequence
>Potri.009G105900.2 pacid=42771075 polypeptide=Potri.009G105900.2.p locus=Potri.009G105900 ID=Potri.009G105900.2.v4.1 annot-version=v4.1
MSVFGGDSWAREAQYRKRRVDDLVIDGLDGSSHKKLSSGKYACLVCPHNPVLESPLALSMHCKGSRHIAAESKLKEKELMRQSEINKRLALSESDVRPAN
PSALNKNTKLVSKPLIEKTKKAATEILGKGTALLSSKNQNCDLKLSVGYVNIMNVVTKICENSSCPEVIASEKMLVQQHLDFRERRERELKFTEAGWKRD
CHGRWFRDENVEFDSDEEDPNVCLG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G105900
[exp]
0 1
AT1G35460 bHLH bHLH080 basic helix-loop-helix (bHLH) ... Potri.013G107500
[exp]
6.32 0.8255
AT5G62950 RNA polymerase II, Rpb4, core ... Potri.005G067600
[exp]
8.60 0.8249
AT4G25180 RNA polymerase III RPC4 (.1) Potri.003G107300
[exp]
17.60 0.7862
AT3G53700 MEE40 maternal effect embryo arrest ... Potri.017G033000
[exp]
19.36 0.8063
AT2G43250 unknown protein Potri.007G124700
[exp]
20.12 0.8209
AT5G53400 BOB1, BOBBER1 BOBBER1, HSP20-like chaperones... Potri.001G132500
[exp]
27.05 0.7960
AT5G19910 MED31 SOH1 family protein (.1.2) Potri.015G110900
[exp]
29.66 0.7719
AT2G22410 SLO1 SLOW GROWTH 1 (.1) Potri.001G019500
[exp]
34.46 0.8074
AT5G13240 transcription regulators (.1) Potri.010G115800
[exp]
36.00 0.7846
AT5G22080 Chaperone DnaJ-domain superfam... Potri.001G215800
[exp]
38.98 0.7681

Potri.009G105900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.