Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15780 152 / 3e-46 Cupredoxin superfamily protein (.1) AT2G15770 114 / 5e-31 Cupredoxin superfamily protein (.1) AT4G33930 77 / 5e-17 Cupredoxin superfamily protein (.1) AT4G34300 68 / 8e-14 Cupredoxin superfamily protein (.1) AT3G27200 47 / 1e-06 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G030000 [exp] 41 / 0.0001 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.001G332200 [exp] 40 / 0.0002 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.013G030450 [exp] 40 / 0.0002 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.019G037800 [exp] 39 / 0.0005 AT3G17675 98 / 4e-27 Cupredoxin superfamily protein (.1) Potri.013G054500 [exp] 39 / 0.0007 AT3G17675 91 / 3e-24 Cupredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009079 [exp] 173 / 1e-55 AT2G15780 143 / 8e-43 Cupredoxin superfamily protein (.1) Lus10025269 [exp] 172 / 5e-55 AT2G15780 141 / 4e-42 Cupredoxin superfamily protein (.1) Lus10002618 [exp] 44 / 5e-06 AT3G27200 89 / 2e-23 Cupredoxin superfamily protein (.1) Lus10022350 [exp] 41 / 0.0001 AT3G27200 169 / 7e-54 Cupredoxin superfamily protein (.1) Lus10041570 [exp] 40 / 0.0002 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10027043 [exp] 39 / 0.0005 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10002614 [exp] 38 / 0.001 AT2G32300 100 / 1e-26 uclacyanin 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G106000.1 pacid=42772852 polypeptide=Potri.009G106000.1.p locus=Potri.009G106000 ID=Potri.009G106000.1.v4.1 annot-version=v4.1 ATGGCTCGTCTAACACATGCACAGGTACTCATCCTTCTGCTTAGTGCTTCCATGTGGGCAATAAGCATGGCAAGCAGGCAATATGGTTTCAACAACACTG ATTGGAGTTACAAGCGTCGCCCTTGTCGCCAAAACAGTACAGCTGCACCCAACAAGATCGTTGTGGGTGGATCTCAAAATTGGACGTTCGGTATCAACTA CGCTGATTGGGCTCTCAAAAACGGCCCATTCTACTTCAATGACACTCTAGTGTTCAAGTATGATCCACCCAGTGACACAAACACCCATCCTCACAGTGTC TACTTGCTACCAAACCTGTGGAGCTTCTTAAAATGTGACCTGAGCAGAGCCAAGTTGGTTGCTAGCGAGACACAAGGAGGTGGTGATGGGTTCGAGTTCG TGCTCAAGAGCTGGCAACCTCATTACTTTGCTTGCGGCGGAGGTGCTGGCTTCCACTGTAATAACGGCACCATGAAGTTCTTTGTCATGCCAATGTTTCG TCGTCGGTATTGA
AA sequence Show only first row Show all	>Potri.009G106000.1 pacid=42772852 polypeptide=Potri.009G106000.1.p locus=Potri.009G106000 ID=Potri.009G106000.1.v4.1 annot-version=v4.1 MARLTHAQVLILLLSASMWAISMASRQYGFNNTDWSYKRRPCRQNSTAAPNKIVVGGSQNWTFGINYADWALKNGPFYFNDTLVFKYDPPSDTNTHPHSV YLLPNLWSFLKCDLSRAKLVASETQGGGDGFEFVLKSWQPHYFACGGGAGFHCNNGTMKFFVMPMFRRRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15780			Cupredoxin superfamily protein...		Potri.009G106000 [exp]	0	1
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.017G102500 [exp]	1.00	0.9515
AT1G11580		ATPMEPCRA	methylesterase PCR A (.1)		Potri.011G025400 [exp]	1.73	0.9201
AT5G51760		AHG1	ABA-hypersensitive germination...		Potri.015G133900 [exp]	2.00	0.9247
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G024900 [exp]	4.24	0.8953
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Potri.015G109800 [exp]	4.89	0.8831	RHD2.2
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.009G118700 [exp]	4.89	0.8938
AT5G57500			Galactosyltransferase family p...		Potri.018G094000 [exp]	7.48	0.9122
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.014G167100 [exp]	9.00	0.8932
AT3G57540			Remorin family protein (.1)		Potri.006G053200 [exp]	10.00	0.8644
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.011G058900 [exp]	11.22	0.8789

Compare expression of checked genes

Potri.009G106000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.