Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33945 576 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G144100 [exp] 832 / 0 AT4G33945 543 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027923 [exp] 626 / 0 AT4G33945 506 / 1e-177 ARM repeat superfamily protein (.1) Lus10012060 [exp] 555 / 0 AT4G33945 445 / 1e-154 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G106100.1 pacid=42770783 polypeptide=Potri.009G106100.1.p locus=Potri.009G106100 ID=Potri.009G106100.1.v4.1 annot-version=v4.1 ATGGGCCCACCAAGCAAGAATGCCCGTACAATATCACAAGAAGCTTTTGATGAACTAGTAAAAGAGAACATAGAAGATCTAGGTATGGACCCCACTGAAG CCCTTGAAGATGCAATCCAGACTCTCACTCTTCAAGGCGTTGATCTCTCTGGGATTGTGACTTGCGTACCGGGAGAGGGTAATGTGAGGGAGAATCCAGT CATTAAGTGTTTGGAGAGATTGGAGGAATTGGGATTTGATAATAATGGTTCGAATGAGATGGCTGGGTTGTTTGATCAGTTGGCTGGATTGTTTAGTGGT GTTGAAGGATCTGGGAATGTTGCAATTGGGGTTAGAAATGGTGGGGTGGAATTGGTTTGTTCTATTTGTTCTAACATTCCTATTGGGTCTGAGAAAGTTC TTGTTTCAGCTTTGGAAACGCTGGCATTGTTGATTCATGATGTTCAAAGTACCGAAACCTTTCGGTCTAGTGATGGACCAAAAATGGTGGTTGATATTTT AAAAGACGGGAGTGAAAGTTTAGACATCCTGAATAGTGGGTTTGCTGTTGTTGCTGCAGCGGCAACTAGCAACGAGGTTGTGAAAGAGTTGTTTATGGAA TTGAAAATTGATGAGCTTATTTTGGAAGCACTGAATAGACAGAGTAAAGGCAACATCCGAGGTCTATATGATTCTATACGTGTTCTCTTGACACCTGATG ATAATCGTGTTGTGGCATCCCAAGTTTATGGTTATGCACGGAGATTTGCCAAAATTGGAATTGCAAGAGCTCTTGTGGAATCACTACGGGCAGGGCTTAC CTCACCCAGTTTAGTCTCAGCAAGCATCGCTTTAAAGGCTGTTGCTGTTAATGATGAAATATGCAAATCCATCACTGAAAGTGGTGGTATCGATGCCATT CTGAAATTTATAGATGACAGTGGTGAACAAGGCAACAAAATTGTAGCTAAAACTTGCTGTTCTTTGTTATCCAAGTTGGCAGGATGTGATTCAAATAAAA GTGCTATTGTAGAGAAGAAGGGTATGAACAAGCTAATCCAACTCTCAGCCAGATTTTCTGATGACCCCCCTGTTCTGCAAGAGGTTATGTCTGTCTTTAC GGTGCTCTGTTTAAGATCTCCAGACAATGCAGCCCGTGCCATGGAAGCCGGAGCTGGAGACCTTGCCATCCAAGTCATGGAGAAGCTTTCTACTGTGCAA CAATTACAGAGGAATTCCTGTCTAATGATCCGTAATCTTGTTGTGAGGAACCCGGAGAACAGAACTACTCTTCTTAGTCATGGCATCGAGAAATTTATAA GAAGGGCAAAGGTAAACCACGAAACATGCAAGGATGCTGCCACCGATGCTCTGAGGGATTTGGGCCTTGATAACTACAATTCATAG
AA sequence Show only first row Show all	>Potri.009G106100.1 pacid=42770783 polypeptide=Potri.009G106100.1.p locus=Potri.009G106100 ID=Potri.009G106100.1.v4.1 annot-version=v4.1 MGPPSKNARTISQEAFDELVKENIEDLGMDPTEALEDAIQTLTLQGVDLSGIVTCVPGEGNVRENPVIKCLERLEELGFDNNGSNEMAGLFDQLAGLFSG VEGSGNVAIGVRNGGVELVCSICSNIPIGSEKVLVSALETLALLIHDVQSTETFRSSDGPKMVVDILKDGSESLDILNSGFAVVAAAATSNEVVKELFME LKIDELILEALNRQSKGNIRGLYDSIRVLLTPDDNRVVASQVYGYARRFAKIGIARALVESLRAGLTSPSLVSASIALKAVAVNDEICKSITESGGIDAI LKFIDDSGEQGNKIVAKTCCSLLSKLAGCDSNKSAIVEKKGMNKLIQLSARFSDDPPVLQEVMSVFTVLCLRSPDNAARAMEAGAGDLAIQVMEKLSTVQ QLQRNSCLMIRNLVVRNPENRTTLLSHGIEKFIRRAKVNHETCKDAATDALRDLGLDNYNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33945			ARM repeat superfamily protein...		Potri.009G106100 [exp]	0	1
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.004G059500 [exp]	1.41	0.9297
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.002G061900 [exp]	2.23	0.9372	KDSA.1
AT1G07220			Arabidopsis thaliana protein o...		Potri.001G252000 [exp]	3.87	0.9254
AT4G21895			DNA binding (.1)		Potri.004G017000 [exp]	4.00	0.9136
AT1G71900			Protein of unknown function (D...		Potri.013G114100 [exp]	4.89	0.9099
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.010G193800 [exp]	5.29	0.9239
AT3G56810			unknown protein		Potri.006G026600 [exp]	6.32	0.9272
AT5G57330			Galactose mutarotase-like supe...		Potri.001G037700 [exp]	7.54	0.9287
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.011G162000 [exp]	8.83	0.9241	Pt-FAH1.1
AT2G43200			S-adenosyl-L-methionine-depend...		Potri.007G123500 [exp]	11.22	0.8874

Compare expression of checked genes

Potri.009G106100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.