Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49570 430 / 1e-151 Peroxidase superfamily protein (.1) AT5G06720 310 / 9e-105 ATPA2 peroxidase 2 (.1) AT5G06730 311 / 1e-104 Peroxidase superfamily protein (.1) AT5G19890 296 / 3e-99 Peroxidase superfamily protein (.1) AT1G44970 287 / 2e-95 Peroxidase superfamily protein (.1) AT2G18150 285 / 1e-94 Peroxidase superfamily protein (.1) AT2G18140 285 / 1e-94 Peroxidase superfamily protein (.1) AT2G38390 281 / 2e-93 Peroxidase superfamily protein (.1) AT4G36430 279 / 1e-92 Peroxidase superfamily protein (.1) AT5G05340 276 / 1e-91 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G144600 [exp] 575 / 0 AT1G49570 400 / 8e-140 Peroxidase superfamily protein (.1) Potri.005G135300 [exp] 416 / 2e-146 AT1G49570 408 / 3e-143 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 315 / 1e-106 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 296 / 2e-99 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.016G058200 [exp] 295 / 6e-99 AT5G06720 428 / 2e-151 peroxidase 2 (.1) Potri.008G103200 [exp] 285 / 1e-94 AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 284 / 2e-94 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 280 / 4e-93 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 280 / 5e-93 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020994 [exp] 442 / 9e-157 AT1G49570 418 / 5e-147 Peroxidase superfamily protein (.1) Lus10009901 [exp] 392 / 3e-137 AT1G49570 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10023858 [exp] 375 / 2e-130 AT1G49570 361 / 9e-125 Peroxidase superfamily protein (.1) Lus10004163 [exp] 296 / 4e-99 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10026748 [exp] 293 / 5e-98 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 293 / 1e-96 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10032786 [exp] 288 / 4e-96 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 285 / 5e-95 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10006534 [exp] 285 / 9e-95 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10010634 [exp] 281 / 5e-93 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.009G106400.2 pacid=42772622 polypeptide=Potri.009G106400.2.p locus=Potri.009G106400 ID=Potri.009G106400.2.v4.1 annot-version=v4.1 ATGCAAATGGCTAAGACACTCTTCTCATACTTCACCATTCCCTTGTTTCTTTGCTTGTCTTCGCTTCACTTAGTCACTTCCTTCCCTTTTGCTAGTGGTC AGATTGATTACAATTACAACTACAATTACTATGACAGGTCATGCCCCCGATTGGGAATGATTGTTAAGTATGGTGTCTGGGCTGCTTTCAAGAATGACAC CAGAATCGCTGCATCCCTCCTTCGATTGCATTTTCATGACTGCTTTGTAAACGGCTGCGATGCTTCGATACTTTTAGATGACACGATTGATTTCAGGGGA GAGAAGAATGCTTTTCCTAACCGTAATTCAGTTAGAGGATATGAAGTCATTGAAAGTATCAAGGCAGATGTTGAAAACGCTTGCTCATCAACTGTTTCAT GTGCTGATATATTGACTCTTGCAGCAAGAGAATCTGTCCTTTTGTCAGGAGGGCCTTATTATCCTCTTTCATTTGGCCGAAGAGATGGATTGACAGCAAG TGAGAAGGCAGCTAATGAACAATTGCCATCACCTATTGAACCACTAGAAAACATCACTGCTAAGTTCACATCAAAGGGTCTTGATATGAAGGATGTTGCA GTCCTCTCAGGAGCACACACCATAGGTTTTGCTCAATGCTTTACCTTCAAGAGGAGGCTCTTTGATTTCAAAGGCACCGGCAAGCCTGACCCCACACTAG AATCTTTGGCCTTGACAAACTTACAAGGCATGTGTCCAAATAAGGATGCATCAAACAGCAATCTTGCTCCTCTTGACTATGCAAGCACATACCGATTTGA CAATGCTTATTATGTGAACCTCGTGAACAGCACTGGCCTTCTTGAATCTGATCAAGCTCTGATGGGGGATCCAAGGACTGCTGCACTTGTTACTGCCTAC AGTTCAAATTCGTATCTTTTCTCGGCTGATTTTGCATCATCAATGACGAAGCTTAGCAATCTTGGTATACTTACAGGGAGCAATGGGCAAATTAGAAAGA AATGCGGGTCTGTTAACTAA
AA sequence Show only first row Show all	>Potri.009G106400.2 pacid=42772622 polypeptide=Potri.009G106400.2.p locus=Potri.009G106400 ID=Potri.009G106400.2.v4.1 annot-version=v4.1 MQMAKTLFSYFTIPLFLCLSSLHLVTSFPFASGQIDYNYNYNYYDRSCPRLGMIVKYGVWAAFKNDTRIAASLLRLHFHDCFVNGCDASILLDDTIDFRG EKNAFPNRNSVRGYEVIESIKADVENACSSTVSCADILTLAARESVLLSGGPYYPLSFGRRDGLTASEKAANEQLPSPIEPLENITAKFTSKGLDMKDVA VLSGAHTIGFAQCFTFKRRLFDFKGTGKPDPTLESLALTNLQGMCPNKDASNSNLAPLDYASTYRFDNAYYVNLVNSTGLLESDQALMGDPRTAALVTAY SSNSYLFSADFASSMTKLSNLGILTGSNGQIRKKCGSVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49570			Peroxidase superfamily protein...		Potri.009G106400 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447500 [exp]	1.41	0.9768
AT2G45220			Plant invertase/pectin methyle...		Potri.014G067100 [exp]	1.73	0.9693	Pt-PE9.1
AT5G20050			Protein kinase superfamily pro...		Potri.018G070800 [exp]	2.64	0.9634
AT1G49000			unknown protein		Potri.010G130600 [exp]	7.21	0.9679
AT1G64160			Disease resistance-responsive ...		Potri.003G134400 [exp]	7.74	0.9638	Pt-DRR206.5
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.001G280000 [exp]	8.36	0.9640
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071600 [exp]	12.32	0.9623
AT3G09220		LAC7	laccase 7 (.1)		Potri.006G094100 [exp]	12.48	0.9510	LAC110a
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Potri.016G049200 [exp]	14.49	0.9553
AT3G09220		LAC7	laccase 7 (.1)		Potri.016G106300 [exp]	14.69	0.9448

Compare expression of checked genes

Potri.009G106400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.