Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19090 349 / 5e-117 RNA-binding protein (.1) AT2G43970 185 / 6e-53 RNA-binding protein (.1.2) AT5G46250 152 / 1e-41 RNA-binding protein (.1.2.3) AT4G32720 51 / 1e-06 ATLA1 La protein 1 (.1.2) AT5G21160 47 / 2e-05 LA RNA-binding protein (.1.2.3) AT4G35890 44 / 0.0002 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G144700 [exp] 581 / 0 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.007G144800 [exp] 217 / 4e-65 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.017G007400 [exp] 205 / 5e-61 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.011G080700 [exp] 160 / 4e-45 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.001G220100 [exp] 46 / 6e-05 AT5G21160 607 / 0.0 LA RNA-binding protein (.1.2.3) Potri.006G241800 [exp] 43 / 0.0003 AT4G32720 403 / 3e-138 La protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012058 [exp] 417 / 3e-143 AT3G19090 427 / 2e-146 RNA-binding protein (.1) Lus10027925 [exp] 268 / 7e-87 AT3G19090 291 / 8e-96 RNA-binding protein (.1) Lus10025608 [exp] 215 / 3e-64 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10027080 [exp] 210 / 2e-62 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10038494 [exp] 161 / 3e-45 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10023315 [exp] 159 / 1e-44 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10022135 [exp] 60 / 2e-09 AT4G32720 389 / 6e-133 La protein 1 (.1.2) Lus10038624 [exp] 51 / 1e-06 AT4G32720 360 / 3e-121 La protein 1 (.1.2) Lus10011685 [exp] 50 / 3e-06 AT4G32720 382 / 1e-128 La protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0123 [poplar] [flax] HTH PF05383 [poplar] [flax] La La domain
Representative CDS sequence Show only first row Show all	>Potri.009G106500.1 pacid=42772530 polypeptide=Potri.009G106500.1.p locus=Potri.009G106500 ID=Potri.009G106500.1.v4.1 annot-version=v4.1 ATGGCACAGGCACAACCTGAAGAAGAAATGTCTAAAGAAAAAGAAATGAAAGAAACAACCAGACCCAAAAATGATAGTGGTTCCGTGTCCTTTAAATTCA ACGCACAGGCACCTGAGTTTTTGCCAAGATCACATACCGCTGCAACCCAAATGCCTATATCAGGTTATTTTTATCCTTACTTTAATTATCTTGGTGCCAC TGCTGCTGGAGGGTCTGACTGGTTCTTTGTTGGGAACCAAGACCACGCTGCCTATTTGATCTCTAATGACCCAAATCTTGCTGCAATGCCTAATGGCCCC ACCAAGAATAGCGATGTTCTCACTGACGATCTTCGAAAAAAGATCATCAAACAGGTGGAGTACCAATTCAGTGACATGAGTCTTCTTGCTAACGAATCGA TGTCGAAACACATTAATAAAGATCCTGAAGGCTATGTGCCAATATCTGTTATTGCTTCAACTAAGAAAATGCGGTCCCTTGTTATCGATAACGATTCGCT TGCTCAAGCACTCAAGTCTTCATCAAAACTTTCCCTGACTGAAGATGGCAAGAAGATCAAACGTAAAATCCCTTTCACTGATAAAGATAGAGAAGAATTG CAGTCTCGTATTGTTGTTGTGGAGAATTTGCCAGAAGATCATTCTCATCAAAATGTCCAGAAGATTTTCAGCGTGGTTGGAAGTGTGAAAACCATCAGAA TATGCCATCCTCATGAATCCAATTCTTCCGGGGCTAAAAATGACTTCTTTGTAACCAATAAGCTGCACGCACTTGTGGAACTTGAAACCCGAAAAATAGC TGAGAAAGCGGCTGAAAAGTTGAATGATGAAAGGAACTGGAGGAAAGGCCTTAGAGTAAGGTTGCTGCTTCGATGCTCGCCAAAATCTGTTCTCCCCAGG GGCAGAAGGTCCGAATTTGATATTTGGGACGAGGAAGATTCACCTCATTATGAATCAACTGTCGATACCTTCAAACCAAACAATTCAGAATCCGTCACAG AGAGTCATGCTGAAGATAGTTCAGGAGCATCAAAGAAGGCATGGGCGGCAAAAGGCCATGGCAAGGGCAAAGGCCGTGGTCAAATCAATTGTAGCAGAGG TCTGCTTGCTCCTGTAAAATGTGCCAGCACCCCTCAACGTGAAGCATCTGCTAAACATGCTTCTAAGAGTCCAAGAATGCCTGATGGGACCAAAGGTTTC AATGTGGGTCGAGGCAAGCCATTGATTACTTCAGCTCTGACCAGCTCAATGATGGAATAA
AA sequence Show only first row Show all	>Potri.009G106500.1 pacid=42772530 polypeptide=Potri.009G106500.1.p locus=Potri.009G106500 ID=Potri.009G106500.1.v4.1 annot-version=v4.1 MAQAQPEEEMSKEKEMKETTRPKNDSGSVSFKFNAQAPEFLPRSHTAATQMPISGYFYPYFNYLGATAAGGSDWFFVGNQDHAAYLISNDPNLAAMPNGP TKNSDVLTDDLRKKIIKQVEYQFSDMSLLANESMSKHINKDPEGYVPISVIASTKKMRSLVIDNDSLAQALKSSSKLSLTEDGKKIKRKIPFTDKDREEL QSRIVVVENLPEDHSHQNVQKIFSVVGSVKTIRICHPHESNSSGAKNDFFVTNKLHALVELETRKIAEKAAEKLNDERNWRKGLRVRLLLRCSPKSVLPR GRRSEFDIWDEEDSPHYESTVDTFKPNNSESVTESHAEDSSGASKKAWAAKGHGKGKGRGQINCSRGLLAPVKCASTPQREASAKHASKSPRMPDGTKGF NVGRGKPLITSALTSSMME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19090			RNA-binding protein (.1)		Potri.009G106500 [exp]	0	1
AT2G32580			Protein of unknown function (D...		Potri.004G006500 [exp]	2.82	0.9296
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Potri.006G154600 [exp]	5.29	0.8968	AKT1.1
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.007G072750 [exp]	7.34	0.9131
AT2G37980			O-fucosyltransferase family pr...		Potri.006G095300 [exp]	7.74	0.9074
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Potri.014G190000 [exp]	7.74	0.8766
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Potri.004G000750 [exp]	7.74	0.9107
AT3G28880			Ankyrin repeat family protein ...		Potri.004G129100 [exp]	10.67	0.8736
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.005G139700 [exp]	12.72	0.8937
					Potri.001G389650 [exp]	16.15	0.8768
AT5G22930			Protein of unknown function (D...		Potri.010G229200 [exp]	20.00	0.8555

Compare expression of checked genes

Potri.009G106500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.