Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15820 855 / 0 OTP51 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) AT1G52640 88 / 6e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 87 / 2e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13040 76 / 4e-14 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G39230 72 / 8e-13 LOJ LATERAL ORGAN JUNCTION (.1) AT3G53700 69 / 1e-11 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 68 / 2e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 67 / 3e-11 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 67 / 3e-11 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G06710 66 / 1e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G131400 [exp] 84 / 2e-16 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G203100 [exp] 76 / 7e-14 AT4G20740 964 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G241300 [exp] 75 / 2e-13 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.017G032100 [exp] 74 / 2e-13 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G082400 [exp] 74 / 2e-13 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G032600 [exp] 71 / 2e-12 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 71 / 2e-12 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G058300 [exp] 70 / 2e-12 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G014500 [exp] 71 / 3e-12 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012055 [exp] 884 / 0 AT2G15820 795 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Lus10020996 [exp] 800 / 0 AT2G15820 737 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Lus10023856 [exp] 190 / 4e-55 AT2G15820 197 / 3e-58 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Lus10027928 [exp] 194 / 1e-52 AT5G20040 363 / 1e-119 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3) Lus10013283 [exp] 76 / 9e-14 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10018567 [exp] 73 / 5e-13 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10034924 [exp] 72 / 7e-13 AT5G21222 599 / 0.0 protein kinase family protein (.1) Lus10033127 [exp] 71 / 5e-12 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10043104 [exp] 69 / 1e-11 AT3G16890 720 / 0.0 pentatricopeptide (PPR) domain protein 40 (.1) Lus10023650 [exp] 69 / 1e-11 AT5G21222 623 / 0.0 protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0324 [poplar] [flax] Homing_endonuc PF03161 [poplar] [flax] LAGLIDADG_2 LAGLIDADG DNA endonuclease family
Representative CDS sequence Show only first row Show all	>Potri.009G106800.1 pacid=42772520 polypeptide=Potri.009G106800.1.p locus=Potri.009G106800 ID=Potri.009G106800.1.v4.1 annot-version=v4.1 ATGCTTCTCAAAGGAGCTCAAGCCCCTTCTCTCATCACTTTCTACCACCATTATAAACCCCCTTTAAACCCTATAGTACCCGACATACTAACCCTCACCT CACCTATGCGCACTTCCCTCTTCTCCTCCTCCCTCTCCCTTTCCCTCCACCAACAACAGCGCATCCACATCCCCGAACCCATTAACACCCCCCGAACACT TCACCCAATTTCAACCCCAAAATGTTTCAGTACTTCTGTCGAACAGTTGGCAAGCGATTCTCAATCTGAAGGGATATTGGATTTTGATGAAAATGAGAGG GAAACTTTTAAATTTGATGATGACGGGCTGGGATCTTCTGGTGCTGGAGGGGATAGGAAGCACTTGGATGCTCCGGCACTGGAGGTGAAGGAGCTAGCGG AGTTGCCGGAGCAGTGGAGGAGAGCGAAATTGGCGTGGTTGTGTAAGGAGTTGCCGGCGCATAAGCCAGCCACTGCTGTGAGGATACTTAATGGGCAGAG GAAGTGGATAAGGCAGGAAGATGCTACTTATATTGTCGTTCATTGTACTCGAATTCGCGAAAACGAGACCGGGTTTAGGGTGTATAAATGGATGATGCAG CAGCATTGGTATCGATTTGATTTTGCGTTGTCCACTAAGTTAGCAGATTACATGGGCAAGGAGCGAAAGTTTGCGAAATGCAGGGAGATATTTGATGATA TTATCAGTCAGGGACGCGTTCCCAGTGAATCAACTTTTCATATCCTTGTCATTGCATATCTTAGTACGACAGTTCAAGGTAGCCTGGAGGAGGCATGCAG CATTTACAATCGGATGATTCAGTTGGGAGGGTACCGGCCACGACTTAGTTTGCACAATTCTTTGTTTAGAGCGCTTGTGAGCAAACCAGGGGTCATTGCA AAACATCATCTCAAACAGGCTGAATTTATTTATCATAATTTGGTGACATGTGGACTTGAGTTGCAGAAGGATATTTATGGTGGTCTCATCTGGCTACATA GCTACCAGGACACTATAGATAAAGAAAGAATCACATCACTAAGGGAGGAGATGAGGCAAGCAGGAGTAGAGGAGAGCCAAGAAGTGCTCGTTTCCATATT GAGAGCTTGTGCAAAGGATGGCGACGTGGAGGAAGCAGAAAGGACTTGGCTCAAACTCGTCCGTCTTGATGAGGGTCTCTCTTCACATGCTTTTGTGTGT AGAATGGAGGTCTTTTCAAAGGCAGGAGAACCTATGAAATCTTTTGAGACATTCAGAGAGATGCAGGAGGTTTTAAGTTCTTACAATGTTGCACCGTATC ATAAAATTATAGAAGTCTTATGCAAGGCTGAAGAAGTGGAACTTGCAGAGTCACTCATGCAAGAGTTAGTTCAGAGTGGTATGAAGCCGCTTACACCATC TTTTATTTCTATAATGGACATGTACCTTAATTTAAACTTGCACGATAAATTAGAATCAGCCTTCTCTGCATGCCTTGAGAAATGTCGACCCAACCGGAGT GTCTACATGATCTACTTGGATTCTTTGGTGAAAGTCGGTAATTTTGACAAAGCTGAGGAGATTTTTAACCACATGCGCAATAATGAAGCGATTGGTGTTA ATGCCAGATCATGCAATACTATTTTAAGAGAATACCTCTCTTCTGGATACCATGTGAAGGCAGAAAGGATATATGATCTAATGTGCCAAAAGAAATACGA TATTGATTCCTCATTGATGGAAAAGCTTGACTCTGTTCTGAGCTCGAGCAGGAAAGTGGCAAGGAGGCGTATTAGCCTCAAGCTTAGCAAAGAGCAAAGA GAAATTTTAGTGGGTTTGTTTTTAGGTGGTTTGCAAATTGAATCAGATGGGAAGAAACACATGATTCAATTCGAGTTCAATCAGAATTCTATCATGCATT CCATTTTGAGGAGACATTTACATGACCAGTACCATGAGTGGTTACATCCATCTTTTAAGCCTAGTGATGATAGTGATAGCGATGACATCCCTTGGAGATT TTGTACCATCTCGCACTCTTGTTTTGATTTCTATGCAGAACAGTTTTGGCCAAGAGGTCAACCTCAGCTGCCAAAGCTAATCCACAGGTGGATGTCACCT CAGGTTCTTGCATACTGGTATATGTATGGGGGTCACAGAACATCATCAGGGGATATTGTGCTGAAGCTAAAGGGGAGTGTTAAGGGTGTTGGAAGGGTTG TCAAAACATTGAAATCAAAATCTCTGGATTGCAGGGTGAAGAGAAAGGGGAAAGTATTTTGGATAGGTTTTCTTGGAAGCGTTTCTACATGGTTCTGGAA ATTGGTAGAACCTTATATATTAGATGACTTGAAAGATTTGCTAAAAGCTGGTGATCCTACCTTGGAGAATTATATGGAAGAACTTCAGAATATGAACTTT GATAGTGGGTCTGATTTTGACGAGGAGGCATCTGAGGACAGCGACATGGACAGTTTATAG
AA sequence Show only first row Show all	>Potri.009G106800.1 pacid=42772520 polypeptide=Potri.009G106800.1.p locus=Potri.009G106800 ID=Potri.009G106800.1.v4.1 annot-version=v4.1 MLLKGAQAPSLITFYHHYKPPLNPIVPDILTLTSPMRTSLFSSSLSLSLHQQQRIHIPEPINTPRTLHPISTPKCFSTSVEQLASDSQSEGILDFDENER ETFKFDDDGLGSSGAGGDRKHLDAPALEVKELAELPEQWRRAKLAWLCKELPAHKPATAVRILNGQRKWIRQEDATYIVVHCTRIRENETGFRVYKWMMQ QHWYRFDFALSTKLADYMGKERKFAKCREIFDDIISQGRVPSESTFHILVIAYLSTTVQGSLEEACSIYNRMIQLGGYRPRLSLHNSLFRALVSKPGVIA KHHLKQAEFIYHNLVTCGLELQKDIYGGLIWLHSYQDTIDKERITSLREEMRQAGVEESQEVLVSILRACAKDGDVEEAERTWLKLVRLDEGLSSHAFVC RMEVFSKAGEPMKSFETFREMQEVLSSYNVAPYHKIIEVLCKAEEVELAESLMQELVQSGMKPLTPSFISIMDMYLNLNLHDKLESAFSACLEKCRPNRS VYMIYLDSLVKVGNFDKAEEIFNHMRNNEAIGVNARSCNTILREYLSSGYHVKAERIYDLMCQKKYDIDSSLMEKLDSVLSSSRKVARRRISLKLSKEQR EILVGLFLGGLQIESDGKKHMIQFEFNQNSIMHSILRRHLHDQYHEWLHPSFKPSDDSDSDDIPWRFCTISHSCFDFYAEQFWPRGQPQLPKLIHRWMSP QVLAYWYMYGGHRTSSGDIVLKLKGSVKGVGRVVKTLKSKSLDCRVKRKGKVFWIGFLGSVSTWFWKLVEPYILDDLKDLLKAGDPTLENYMEELQNMNF DSGSDFDEEASEDSDMDSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.009G106800 [exp]	0	1
AT5G24690			Protein of unknown function (D...		Potri.003G019600 [exp]	2.64	0.9319
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.013G058900 [exp]	4.47	0.9144
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Potri.010G173400 [exp]	4.47	0.9198
					Potri.010G111100 [exp]	5.38	0.8852
AT1G10330			Tetratricopeptide repeat (TPR)...		Potri.012G082900 [exp]	6.48	0.8899
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.018G085800 [exp]	12.96	0.9110
					Potri.007G142450 [exp]	13.07	0.8315
AT3G22150			Tetratricopeptide repeat (TPR)...		Potri.006G007800 [exp]	16.06	0.9193
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	19.62	0.9035
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	20.00	0.9111

Compare expression of checked genes

Potri.009G106800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.