Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50440 240 / 9e-79 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) AT2G23610 238 / 3e-78 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT2G23620 223 / 3e-72 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23600 216 / 2e-69 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT4G37150 216 / 2e-69 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT5G10300 215 / 3e-69 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1) AT2G23580 210 / 4e-67 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT2G23560 207 / 6e-66 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23590 205 / 4e-65 ATMES8 methyl esterase 8 (.1) AT2G23550 201 / 1e-63 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G107200 [exp] 573 / 0 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036700 [exp] 313 / 1e-107 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.007G036800 [exp] 297 / 2e-100 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.007G037700 [exp] 244 / 3e-80 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037300 [exp] 242 / 2e-79 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133800 [exp] 211 / 2e-67 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133700 [exp] 211 / 2e-67 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133600 [exp] 209 / 1e-66 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.011G082400 [exp] 197 / 2e-62 AT2G23590 254 / 4e-85 methyl esterase 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022467 [exp] 294 / 4e-100 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10015532 [exp] 273 / 9e-92 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10023326 [exp] 254 / 3e-84 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10005402 [exp] 246 / 5e-81 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005400 [exp] 245 / 6e-81 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10009203 [exp] 241 / 1e-78 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10009205 [exp] 229 / 1e-74 AT2G23580 194 / 3e-61 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005401 [exp] 223 / 1e-70 AT2G23600 184 / 5e-56 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10038592 [exp] 218 / 3e-70 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10013193 [exp] 178 / 4e-53 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.009G107500.1 pacid=42772699 polypeptide=Potri.009G107500.1.p locus=Potri.009G107500 ID=Potri.009G107500.1.v4.1 annot-version=v4.1 ATGGAGCAAGCAAAGAAACATTTGGTGTTAATTTCCATTTTCATCATCCTTCTCAATATTGCAACCAATAAGGCCTTATCGCAGCCACTCCATAATCCTA GCAAGCATTTTGTGCTAGTTCACGGGGCAGGCCATGGTGCCTGGTGTTGGTACAAACTTGTGCCTCTATTAAGATCATCAGGTCACAATGTTACCACTAT AGATTTAGCAGCTTCTGGGATTGACCCGCGGCAGATTAGCGATCTTCAATCAATATCTGACTATATTAGGCCGTTGAGAGATCTTCTGGCATCTCTACCA CCAAATGAAAAGGTTATCCTTGTTGGTCATAGCTTAGGGGGATTGGCACTTTCTCAAACCATGGAGAGACTTCCAAGCAAGATTTCCGTGGCTGTTTTCC TTACTGCCGTCATGCCAGGCCCTTCCCTTAACATTTCCACTCTTAGTCAAGAGCTTGCAAGAAGGCTAACTGATATGTTAGACACCCGCTACACATTCGG TAATGGCCCGAATAACCCACCAACATCTCTTACCTTTGGGCCCAAATACCTACTTTTAAGATTGTATCAGCTCAGTCCAATTGAGGACTGGACATTGGCC ACAACACTGATGAGGGAAACACGTCTATTTACTGATCAAGAATTGTCAAGGGACCTTGTACTAACGAGGGAGAAATATGGCTCGGTTAAAAGAGTTTTTA TCATTGCAGAGAAAGATTTGACCTTGGAGAAAGATTTTCAACAATGGATGATCCAAAAAAATCCACCCAATGAAGTGAAAGAGATACTAGGATCCGATCA CATGTCCATGATGTCTAAACCTAAGGAACTTTGGGCTTGTCTGCAAAGAATTTCTAAGAAATATAATTGA
AA sequence Show only first row Show all	>Potri.009G107500.1 pacid=42772699 polypeptide=Potri.009G107500.1.p locus=Potri.009G107500 ID=Potri.009G107500.1.v4.1 annot-version=v4.1 MEQAKKHLVLISIFIILLNIATNKALSQPLHNPSKHFVLVHGAGHGAWCWYKLVPLLRSSGHNVTTIDLAASGIDPRQISDLQSISDYIRPLRDLLASLP PNEKVILVGHSLGGLALSQTMERLPSKISVAVFLTAVMPGPSLNISTLSQELARRLTDMLDTRYTFGNGPNNPPTSLTFGPKYLLLRLYQLSPIEDWTLA TTLMRETRLFTDQELSRDLVLTREKYGSVKRVFIIAEKDLTLEKDFQQWMIQKNPPNEVKEILGSDHMSMMSKPKELWACLQRISKKYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Potri.009G107500 [exp]	0	1
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Potri.009G107200 [exp]	1.41	0.9052
AT5G27020			unknown protein		Potri.005G021500 [exp]	3.16	0.8248
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Potri.007G083300 [exp]	7.34	0.8061
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G084400 [exp]	9.79	0.8543
AT1G53440			Leucine-rich repeat transmembr...		Potri.011G106400 [exp]	19.79	0.7729	PK9.3
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412000 [exp]	20.19	0.8080
AT4G08290			nodulin MtN21 /EamA-like trans...		Potri.005G176100 [exp]	20.49	0.7587
AT1G03700			Uncharacterised protein family...		Potri.013G131700 [exp]	20.83	0.7437
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.007G135000 [exp]	22.58	0.8221
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Potri.004G051800 [exp]	24.00	0.7289

Compare expression of checked genes

Potri.009G107500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.