Plant FIBer expression Database

Potri.009G107800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15860 562 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021000
[exp]
627 / 0 AT2G15860 539 / 0.0 unknown protein
Lus10023852
[exp]
618 / 0 AT2G15860 538 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.009G107800.3 pacid=42772115 polypeptide=Potri.009G107800.3.p locus=Potri.009G107800 ID=Potri.009G107800.3.v4.1 annot-version=v4.1
ATGGAAGATGGCATAAACCCTCAAATTAAAGAAGATAAAGAAGAACCCCAAGAAGAAGAAAAACATGAGGGATCACAAACAAGCAGTGGATGGGGAGGGT
GGGGTTTCTCTGCTTTCTCTGTTTTATCAGATCTTCAAAAGAAAGCTGAAGAGATCTCTCGCAATGCTGCTGTGGTTGCAGAAAAGGCAGCAAAGAGCAT
CACAGATTTGAATATTGCTGAGGACTCAGAATCTTCAAAAGGGGAGCCAGAGGAAGAAGAATCTGCAAGTGATAAGGAAACCAAAGGTGAGGAAACTGAA
GATGACAAGCTTCGGAAATCTACTTTGGAGAAATTGGAAAAAGCAAGTGAGGATTCCATCCTTGGCCAGGGCTTGAAGGTTCTTGATCACTCTGTGGAGA
ATTTGGCTTCAGGAGCTTGGCAGGCATTAGGAAGTGCATGGAAAGGGGGTTCTAATCTGGTTCAAAAGCTTGAGAATTCTGCTGTGAACCTTGCGGATTC
AATTCAGCAAGGTAGCTTACCAGGATCAGCCGGTTCAGTTGCACCATCCTTACTTGAGACTGGAAAAGCTTTTACAGCAAAGGGAATGCAAGTACTTGAA
TATGTAGGCAAGGAAACCATGGATCTACTGATCACAGAGACTGGTATTGAAGTTGAGAAAAACACTAAGAACTCTGAAAAAGGAGCTGATGAGGATCATT
TACTTGAGGAGATGACATTTGATCGGTGTTTCTATATATATGGAGGTCCAGAACAGTTGGAGGAGTTGGAGGCATTGTCCAACCATTATGCACTGTTATT
TAACCGCAGAAAGGCTAAATTGTCATCAGAAGAGAAGTCTGCATATGATGGAAAGCTTAAACTGGTTCAGCAAATTTTTAGTTTAAGCACTGAAATGGAT
GCTGCAGAGTTTGAAAAAGGAAAGAAAATAGAGTCTGCAACTGAGGGAAGTAGTGACGAGATGAAAAATTTACATGATTCAAGCGTCAGCAAGGCTGCTG
ACATGGCTGCAGGGTTCACAAATGCTTTAGCAGGACAAGCTGTGAATGACATAATTCAAAGGACAGCTGGAAGACTTGAAACTCTTCACTCAGAGGGGGT
CCATAGACTCTCTGAAATGTGCTGTTCGGCAGTGTCTCAACTTCTGATGCTTGGTAAATCTGTCATATCCAATGCTAACAAAGTTCAGCAAGAAGATGCT
GACGGGGATATTGTGGACATTGACTGGCCTGAAGATTCTGTTGAAAAAGCTAAGGTGATGCGCACCAAGGCACGGTCAATGGCAGGATATGTGGAAGCAG
TTTCCAACAGCTTTATCACAGGCATCTCTGATGTAGCAGAAGCTTATGCAGCAGCCATAAACGGTGCTACTGCAGATTCCCATGAAAACTTCCAACAATC
ATCAATTCAGGACAAAGTCAATGCCTTCTCTGAACTTCTCCGCACTGACCGGACCACTGCAGTGAGCAAAATCCAGGATGGGCTCCAGTACTTGTCATAT
GTAGTCATTTCCACATCTATGCCTGCTGCTTGA
AA sequence
>Potri.009G107800.3 pacid=42772115 polypeptide=Potri.009G107800.3.p locus=Potri.009G107800 ID=Potri.009G107800.3.v4.1 annot-version=v4.1
MEDGINPQIKEDKEEPQEEEKHEGSQTSSGWGGWGFSAFSVLSDLQKKAEEISRNAAVVAEKAAKSITDLNIAEDSESSKGEPEEEESASDKETKGEETE
DDKLRKSTLEKLEKASEDSILGQGLKVLDHSVENLASGAWQALGSAWKGGSNLVQKLENSAVNLADSIQQGSLPGSAGSVAPSLLETGKAFTAKGMQVLE
YVGKETMDLLITETGIEVEKNTKNSEKGADEDHLLEEMTFDRCFYIYGGPEQLEELEALSNHYALLFNRRKAKLSSEEKSAYDGKLKLVQQIFSLSTEMD
AAEFEKGKKIESATEGSSDEMKNLHDSSVSKAADMAAGFTNALAGQAVNDIIQRTAGRLETLHSEGVHRLSEMCCSAVSQLLMLGKSVISNANKVQQEDA
DGDIVDIDWPEDSVEKAKVMRTKARSMAGYVEAVSNSFITGISDVAEAYAAAINGATADSHENFQQSSIQDKVNAFSELLRTDRTTAVSKIQDGLQYLSY
VVISTSMPAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G15860 unknown protein Potri.009G107800
[exp]
0 1
AT4G12650 Endomembrane protein 70 protei... Potri.014G172200
[exp]
8.48 0.9067
AT1G52630 O-fucosyltransferase family pr... Potri.003G062600
[exp]
17.97 0.8799
AT1G60780 HAP13 HAPLESS 13, Clathrin adaptor c... Potri.010G044700
[exp]
22.62 0.8959
AT5G27490 Integral membrane Yip1 family ... Potri.013G023400
[exp]
22.84 0.8942
AT1G71900 Protein of unknown function (D... Potri.003G009700
[exp]
28.12 0.8853
AT2G01070 Lung seven transmembrane recep... Potri.001G209400
[exp]
30.33 0.8898
AT5G11960 Protein of unknown function (D... Potri.018G060500
[exp]
35.28 0.8874
AT5G25510 Protein phosphatase 2A regulat... Potri.006G247100
[exp]
37.45 0.8728
AT5G36290 Uncharacterized protein family... Potri.013G086700
[exp]
42.07 0.8857
AT1G10950 AtTMN1 transmembrane nine 1 (.1) Potri.003G015300
[exp]
43.78 0.8844

Potri.009G107800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.