Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19020 562 / 0 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 558 / 0 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 555 / 0 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 497 / 7e-160 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 413 / 2e-132 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 408 / 2e-127 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 396 / 1e-121 Leucine-rich repeat (LRR) family protein (.1) AT1G12040 379 / 2e-116 LRX1 leucine-rich repeat/extensin 1 (.1) AT1G62440 380 / 3e-116 LRX2 leucine-rich repeat/extensin 2 (.1) AT5G25550 367 / 5e-116 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146350 [exp] 698 / 0 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 520 / 5e-172 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 420 / 1e-130 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G075900 [exp] 411 / 2e-129 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 403 / 9e-128 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G151000 [exp] 400 / 4e-127 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G245600 [exp] 400 / 4e-127 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 374 / 6e-119 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.018G035100 [exp] 363 / 4e-112 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027935 [exp] 477 / 7e-154 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 471 / 7e-152 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 459 / 1e-147 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 392 / 1e-123 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10017727 [exp] 392 / 1e-121 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 363 / 8e-115 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 362 / 9e-114 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 333 / 5e-104 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 328 / 2e-99 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 312 / 1e-95 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.009G108100.2 pacid=42772542 polypeptide=Potri.009G108100.2.p locus=Potri.009G108100 ID=Potri.009G108100.2.v4.1 annot-version=v4.1 ATGGCTGAACCTCTCAGAGTCTTGGGCTGCTTTTTCTTTTTTTCCTTTCTCTTATCTTCTTTCTCAAACTTCTCTCTTGCCTTAACTGATGCTGAAGCAT CTTCTATTGCTCGTCGCCAGCTATTGACATTACATGAAAATGGTGAACTTCCAGATGATTTTGAGTATGAGGTGGATGTGAAAGAAACCTTTGCAAACCA AAGGCTCAGGAGGGCATATATTGGTCTCCAGGCCTGGAAAAAGGCAATGTACTCCGACCCGTTTAATACAACTGGCAATTGGGTTGGCGCCGATGTGTGT GCTTATAATGGTGTGTTTTGTGCACCGGCTCTTGACGACTCTGGTCTAAGCGTTATGGCAGGTGTTGATCTTAACGGTGCTGATATTGCTGGGTACCTTC CAGCTGAATTGGGGCTTTTGACAGATGTTGCATTGTTCCACATTAACTCTAACAGGTTTTGTGGAATCATCCCCAAGAGCTTTTCCAAGCTCACACTCAT GTACGAGTTTGATGTCAGCAACAACCGCTTTGTTGGTGACTTCCCTTCTGTTGTTTTAACCTTGCCAAGCCTCAAGTATCTTGACATCAGATTCAATGAT TTCGAAGGTAGTTTGCCTCCAGAACTCTTCAACAAGGACCTCGATGCTTTGTTCTTGAATGACAACCGGTTCACATCCACCATTCCGGAGACAATAGGCA ACTCCCCAGTTTCTGTAGTCACATTTGCGAACAACAAATTCACTGGCTGCATTCCACACAGCATCGGCAAGATGACCAACTTGAACGAGGTCATCTTTAT GGGCAATGATCTTGGTGGTTGCTTCCCAGCAGAAATTGGGCTGCTTGGTAATGTGACTGTGTTTGATGCCAGCCACAATGGGTTCACAGGAATCTTGCCG TCCAGCTTTGCAGGGCTAAAGAAGGTTGAACTCTTGGATCTTGCAGACAACAAGCTGACAGGATTTGTGCCTGAGAACATTTGTAGGTTGTCAAGCTTGA CGAACTTCACATTCTCGTATAACTACTTCAAGGGGGAGGCTCAAGCTTGCGTGCCTCCATCAAGGAAGGACACCGTGTTGGATGATACCAGCAATTGCCT GTCTGACAGGCCAAAGCAGAAGTCAGCCAGGACATGTTACCCAGTGGTGAGCCGACCTGTGGATTGCAGCAAGGACAAGTGTTCTGGAGGAGGAGGTTCT TCAAACCCCCATCCAAAACCACAACCCACACCACCTACTCCAGAACATAAACAAATCCCATCTCCACCTAAATCTACTTCTACTCCAACACCATCATCAC CAATCCCTGCCCCTCAAACACCAGAATTACCAAAACCAGAACCTAAGTTACCGCTGGCTCCAGTTGAACCAATTAGTCCATCAACACCAGAGGTATCCTT ACCACCATCTTTATCAATTAGTCCTTCAACTCCGGAGATATCCTCACCACCATCTTCATCAAGTCCATCTACCCCATCATCTGACCCATACAATCCAGGA CCTGGTGGGCATGGCGAGACACTGCCATCACCAAAATCTGCACCGTCACCCAATCCATTTAATAATTCACCAGTTGGGCACAATGAGACACCACCATCAC CGGAGTCTGCACCGTCACCCGATCCATTCAATAATTCACCAGATGGGCATAACGAGACACCGCTATCACCGGAGTCTGCACCGTCACCCAATCCATTCAA TAATTCACCAGATGGGCACGACGAGACACCGCTATCACCGGAGTCTGCACCGTCACAATCACCGGAGTCTGCACCGTCACCCGATCCATTTAATAATTCA CCAGATGGGCACGATGAGACACCACAATCATCGGAGTCTGCACTGTCACCCGATCCATTCAATAATTCACCAGATGGGCACGACGAGATACCACCATCAC CAGAGCCGTCACCGGATCCATTTAATAATTCACCGAATGGGCATGATGAGACACCAACATCACCAGAGTCCGCACAATCACCTGATCCATTTAATAATTC ACCAATTGGGCACGACAAGACACCACCACCATCATCTGAGATATCTATACCACCATCACCCTTAATTAGTCCACCAACATCGGAGAAACATATACCACCA TCATCAGAGTTTGCTCCATCACCTGATTCATATAATTTACGACCTGGTGGGCATGACGATACACCACCATCACCAAAATCTGCACCGTCACCTGATTCAT TTGATAATTCATCAATTAGGCATGACAAGACACCACCACCATCATCTGAGATTGCTATACCACCATCATCCTCATTTAGTCCATCAACTTCAGAGAAACC CATGCCTCCATCACCTAATTCTACACCATCACCTAATTCATATAACCTAGAACTTGGTGGGCATTATGGACCACCACCATCACTAATGCCTTCAGTAAAG CCCGAGACACCAGAACCATCACCACAACCAGAAATACCAATAGTAAATCATCATTCTCCTTTACCTTTGGTTCACTCACCTCCACTACAACCAGAAACAC CAATTGTAAATCATCACTCTCCTCAACTTCTAGTTCACTCACCTCCACCATCATCACAATCCCTACCCCCTCTAGTCTATTCACTTCCACCACCAGCACA TTCACCCCCACCATCAATTCATTTCCCACCACCACCTGTACACTCTCCCCCACCACCCCCTGTGCATTCACCACCACCACCTATCTATTCCCCTCCACCA CTAGTTTACTCTCCCCCTCCGCCAGTACATTCACCGCCACCACCAGTGCACTCTCCCCCACCGCCAGTACAATCATTCCCACCACCAGTGCACTCTCCCC CACCACCTGTACACTCACCCCCTCCACCACCAGTTTACTCTCCCCCTCCGCCAGTACATTCACCGCCACCACCAGTGTACTCTCCCCCACCGCTGGTACA ATCACCCCCACCACCAGTGCACTCTCCCCCACCACCTTTACACTCACCCCCTCCACCACCAGTTTACTCTCCCCCTCCGCCAGTACATTCACCGCCACCA CCAGTGCACTCTCCCCCACCGCCGATACAATCACCCCCACCACCAGTGCACTCACCCCCTCCACCACCTATACACTCACCCCCGCCACCCGTGCAATCTC TCCCTCCACCACCTGTAAACTCACCCCTGCCACCCGTGCACTCCCCACCACCACCGGTTCATTCTCCTACATCACCCATACACTCCCATCCACCACCTGT AAACTCACCCCCGCCACCCGTGCAGTCTCTCCCTCCACCACCCGTAAACTCCCCCCCACCACCAGTTCATTCTCCTACACCACCCATACACTCCCCTTCA CCACCACTTCACTCTCCACCACCACCAATTAGATCACCTCCACCTCCAGTTTTCTCTCCACCACCAGTAATTGTATCTCCTCCTCCACCTCCCCCGGAAG AAGACTTCATCCTTCCACCAAACCTCGGATTCCAATATGCATCACCACCTCCACCAACGTTCCCAGGCTACTAA
AA sequence Show only first row Show all	>Potri.009G108100.2 pacid=42772542 polypeptide=Potri.009G108100.2.p locus=Potri.009G108100 ID=Potri.009G108100.2.v4.1 annot-version=v4.1 MAEPLRVLGCFFFFSFLLSSFSNFSLALTDAEASSIARRQLLTLHENGELPDDFEYEVDVKETFANQRLRRAYIGLQAWKKAMYSDPFNTTGNWVGADVC AYNGVFCAPALDDSGLSVMAGVDLNGADIAGYLPAELGLLTDVALFHINSNRFCGIIPKSFSKLTLMYEFDVSNNRFVGDFPSVVLTLPSLKYLDIRFND FEGSLPPELFNKDLDALFLNDNRFTSTIPETIGNSPVSVVTFANNKFTGCIPHSIGKMTNLNEVIFMGNDLGGCFPAEIGLLGNVTVFDASHNGFTGILP SSFAGLKKVELLDLADNKLTGFVPENICRLSSLTNFTFSYNYFKGEAQACVPPSRKDTVLDDTSNCLSDRPKQKSARTCYPVVSRPVDCSKDKCSGGGGS SNPHPKPQPTPPTPEHKQIPSPPKSTSTPTPSSPIPAPQTPELPKPEPKLPLAPVEPISPSTPEVSLPPSLSISPSTPEISSPPSSSSPSTPSSDPYNPG PGGHGETLPSPKSAPSPNPFNNSPVGHNETPPSPESAPSPDPFNNSPDGHNETPLSPESAPSPNPFNNSPDGHDETPLSPESAPSQSPESAPSPDPFNNS PDGHDETPQSSESALSPDPFNNSPDGHDEIPPSPEPSPDPFNNSPNGHDETPTSPESAQSPDPFNNSPIGHDKTPPPSSEISIPPSPLISPPTSEKHIPP SSEFAPSPDSYNLRPGGHDDTPPSPKSAPSPDSFDNSSIRHDKTPPPSSEIAIPPSSSFSPSTSEKPMPPSPNSTPSPNSYNLELGGHYGPPPSLMPSVK PETPEPSPQPEIPIVNHHSPLPLVHSPPLQPETPIVNHHSPQLLVHSPPPSSQSLPPLVYSLPPPAHSPPPSIHFPPPPVHSPPPPPVHSPPPPIYSPPP LVYSPPPPVHSPPPPVHSPPPPVQSFPPPVHSPPPPVHSPPPPPVYSPPPPVHSPPPPVYSPPPLVQSPPPPVHSPPPPLHSPPPPPVYSPPPPVHSPPP PVHSPPPPIQSPPPPVHSPPPPPIHSPPPPVQSLPPPPVNSPLPPVHSPPPPVHSPTSPIHSHPPPVNSPPPPVQSLPPPPVNSPPPPVHSPTPPIHSPS PPLHSPPPPIRSPPPPVFSPPPVIVSPPPPPPEEDFILPPNLGFQYASPPPPTFPGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19020			Leucine-rich repeat (LRR) fami...		Potri.009G108100 [exp]	0	1
AT2G42700			unknown protein		Potri.014G142900 [exp]	1.41	0.7994
					Potri.018G077100 [exp]	10.90	0.8113
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.019G041900 [exp]	26.64	0.7806
AT4G03030			Galactose oxidase/kelch repeat...		Potri.005G221300 [exp]	29.32	0.7814
AT5G66820			unknown protein		Potri.007G041300 [exp]	29.81	0.7556
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.003G171200 [exp]	42.84	0.7502
					Potri.002G166850 [exp]	59.79	0.7269
AT1G19480			DNA glycosylase superfamily pr...		Potri.002G035300 [exp]	62.52	0.7392
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Potri.013G158200 [exp]	76.88	0.7303
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.008G216400 [exp]	85.49	0.7210

Compare expression of checked genes

Potri.009G108100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.