Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15900 1115 / 0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) AT1G15240 329 / 1e-96 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146600 [exp] 1765 / 0 AT2G15900 1073 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.001G183100 [exp] 499 / 2e-158 AT1G15240 512 / 1e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Potri.003G053200 [exp] 266 / 7e-74 AT1G15240 986 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027939 [exp] 1201 / 0 AT2G15900 1001 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10023847 [exp] 707 / 0 AT2G15900 606 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012042 [exp] 590 / 0 AT2G15900 495 / 9e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012043 [exp] 459 / 9e-154 AT2G15900 404 / 1e-133 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10035877 [exp] 242 / 7e-66 AT1G15240 1026 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10025785 [exp] 201 / 2e-52 AT1G15240 953 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10036765 [exp] 64 / 2e-11 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [poplar] [flax] PX PX domain PF02194 [poplar] [flax] PXA PXA domain PF08628 [poplar] [flax] Nexin_C Sorting nexin C terminal
Representative CDS sequence Show only first row Show all	>Potri.009G108300.1 pacid=42772057 polypeptide=Potri.009G108300.1.p locus=Potri.009G108300 ID=Potri.009G108300.1.v4.1 annot-version=v4.1 ATGAAGGCTATGGAGACAATACAGGATCTGATTGAAGAAGCTAAAGTTCGAATGGTTTGGTGGTGTCTCTGTATCTTTTGCGTCACTTACTTCTTATCTC ATACAAGTTCATCAATGTGGATGAATCTTCCCATATCAATTCTCTTTGTTTCCTTGTTACGAATTTTGTGTAATGAGGTGGAGTTCAGCTGGAAAGTGCG CCGGTCAGTCCGTCGACCTTCTTATTTGTCACATTTGGAGAAGAAACAACTGTCTTTGAATGATTCACGACTTTCTTCCGTGCCACCGCCACCAAAGTGG AAGAGGAAAATTGATTCTCCGGTTGTCGAGGCTGCAATTAGTGATTTCATTGATAAGATATTGAAGGATTTTGTCGTAGATTTGTGGTATTCAGAAATTA CGCCAGATAGGGAGGCACCTGAACTGATGCGGTCAGTGATCATGGATGCTCTTGGTGAGATATCTGGAAGGGCTAAAGAGATAAACCTCATTGACTTGTT AACAAAGGATATAGTTGATTTAATAGGGGATCACTTAGACCTATTTAGACGAAACCAAGTGGCCATAGGTGCTGATGTAATGGCAACTCTTTCCACTGAA GAGAGAGATGAAAGGTTGAAACACCATCTAATTGCTTCTAAGGAGCTTCATCCTGCACTGATATCTCCTGAGAGTGAGTACAAGGTTCTTCAACAGTTGA TTGGTGGAGTTTTAGCTATAGTACTGAGACCTCGTGAAGCTCAGTGTCCGCTGGTTTGGACTATTGCTCGAGAGATCGTAACTTGCTTGGTAATGCAGCC TCTTATAAACCTTGCAAGCCCTGCGTATATCAATGAGGTGCTTGAATTGATCTTACTTGCCATTAAAGAGGATAGTCCAAAAGATGCTGGTGGTGATCAC CCTGCAGGGAGTGTGCATAATGTTGACTCTACCTCAAGAAAAGATCCTTCCTTAAATAGTCAAAGGTCTGAGATTTTTGACAACAAAATGGACTATCGAG GGACTGATAAAACTTTGGCTAAAGTTGTTGATCACAGAGAAACATACTTGGATTATAACTCACACCAACAAGAGCCTATGCAGTCACATCCTGTGGAGTG GGCACGAATATTAGAGGTGGCGACCCATAGAAGAACGGAAGTTCTTACACCTGAAAATTTGGAAAATATGTGGGCAAAAGGAAGAAATTATAAAAAGAAA GAGAACAAGAATGTCAAAGCAGGGGTTCCGAAATCAATGGCAAAGAGTTCTGTTACAAACATCGCAGCTACTACAAATTTGGGAAAAAGTATGCCAATAA ATAGCAACACAATGTCTACAAAGATGGAGGAGAAAGCAGTATTGCATCTAACACATGGATTAAGTCTAGATACTTTAACAAGTCACGAGAATAGAGATGG GAGACAGTTTACGCAGAATGGTAGCCAGGAATTGTCTTTTGAAGGGTCACATGTTGGTGGTGAATGGGAGAATGCTGACAATCTCGCTTCGAATGAAAAC AGAGGTGGGATTAAGAGATCCAATAGCACCTCTGCTCTAGAAGCACTGCCTGATAAAAAGAAGGCATTTACAGGAGATGGTGGGGGGTCCATTATCTCAG AGTTTTACAGCCCGGATTCTCACAGGAGTGCAGATCATGCTGTTAAGAAGGTTTCAGACATAGTACTTCGCAGCGAGGGACCTTATAGTCCCAAGTTGAA GTGTCGGGTTATGGGAGCATATTTTGAGAAACTTGGGTCAAACTCTTTTGCAGTTTACTTAATAGCAGTGACAGATTCAGAGTACAGAACTTGGTTTGTG AAAAGAAGGTACAGGAATTTCGAGAGACTGCATAAACATCTAAAAGAGATCCCTAATTACACATTACACTTGCCTCCGAAAAGGATATTCTCGTCAAGCA CTGAAGATGCTTTTGTTCATCAACGCTGTATTCAGCTTGATAAATATCTTCAAGATCTCTTGTCCATAGCCAATGTGGCGGAGCAGCATGAAGTGTGGGA TTTCTTAAGTGTTTCCTCAAAAAATTACTCTTTTGGAAAATCTTCCTCGGTCATGAGAACCCTGGCAGTAAACGTGGATGGTGCTGTGGATGATATTGTG CGCCAGTTCAAAGGGGTTTCAGATGGCTTTATGCGTAAAGTTGTTGGTTCGACTTCCCCATTTGATGAAACTGATTCTTCAATCTACAGCAGGAACTTGT CCTGGCATTCAGATGATGTGAATAAACATGTCTTGAGGCAGGATACCTTAGAACCTGTGAACAGCTTTTCTGATACTGAGGAAAGTTATATTCAAGAAAA TCAGGAACAGAAGGGAGTTGGATCTACTGCACAAGCCAATGGTTGGCATTCAGACAATGAATTGAATGCAAAGGGTTTTCCTCCTCGGGTGATCAAACAG GGTGATGAGTCGCGGACCTTAGGTTTAGAGAAAAAACATGTTTTAGAGGAGAAAAGTAAACGGATTAACCATGGTGGGTTTTCTGTAGAAAACTCTGCAG TAGTGTCCAGTCATATGGACGATCCAGTTGGAATGCCACCTGAGTGGACCCCATCTAATGTAAGTTTACCTCTGCTGAATCTAGTTGATAAGGTGTTTCA ACTTAAAAGAAGAGGATGGCTGAGAAGACAGGTCTTTTGGATATCAAAGCAAATACTGCAGTTGATAATGGAAGATGCTATTGATGACTGGCTTTTGAGA CCAATTTACTGGCTTCGGAGAGAGGACACCATTGCTCTTGGGATTCAGTGGGTGCAAGATATTCTCTGGCCAGAAGGCATATTCTTTACAAGGACAGGGG GTGCACAAAGCAAAGTTGACGATGATCAACCAAATCTCATACCTTTTCAGATTAGCCAACTGGGTGGCAGTAAGGTCTCTAATAAAGGTTCATTTGAGGA ACAACTCGAGGCTGCTCGTAGAGCAAGTGATATCAAGAAAATGCTCTTTGATGGAGCTCCATCAACCTTGGTCAGCTTGATTGGAACTAAGCAGTACAAA CGCTGTGCAAGAGACATTTTTTACTTCACTCAGTCTACTATCTGTGTGAAGCAACTCACGTACGGAATACTTGAACTATTAGTTTTATCAGTTTTCCCTG AGCTCCGGGATCTTTTGCTGGGTCTCAACGAGAAGATGCGTGCTCCACCTGCATAG
AA sequence Show only first row Show all	>Potri.009G108300.1 pacid=42772057 polypeptide=Potri.009G108300.1.p locus=Potri.009G108300 ID=Potri.009G108300.1.v4.1 annot-version=v4.1 MKAMETIQDLIEEAKVRMVWWCLCIFCVTYFLSHTSSSMWMNLPISILFVSLLRILCNEVEFSWKVRRSVRRPSYLSHLEKKQLSLNDSRLSSVPPPPKW KRKIDSPVVEAAISDFIDKILKDFVVDLWYSEITPDREAPELMRSVIMDALGEISGRAKEINLIDLLTKDIVDLIGDHLDLFRRNQVAIGADVMATLSTE ERDERLKHHLIASKELHPALISPESEYKVLQQLIGGVLAIVLRPREAQCPLVWTIAREIVTCLVMQPLINLASPAYINEVLELILLAIKEDSPKDAGGDH PAGSVHNVDSTSRKDPSLNSQRSEIFDNKMDYRGTDKTLAKVVDHRETYLDYNSHQQEPMQSHPVEWARILEVATHRRTEVLTPENLENMWAKGRNYKKK ENKNVKAGVPKSMAKSSVTNIAATTNLGKSMPINSNTMSTKMEEKAVLHLTHGLSLDTLTSHENRDGRQFTQNGSQELSFEGSHVGGEWENADNLASNEN RGGIKRSNSTSALEALPDKKKAFTGDGGGSIISEFYSPDSHRSADHAVKKVSDIVLRSEGPYSPKLKCRVMGAYFEKLGSNSFAVYLIAVTDSEYRTWFV KRRYRNFERLHKHLKEIPNYTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLQDLLSIANVAEQHEVWDFLSVSSKNYSFGKSSSVMRTLAVNVDGAVDDIV RQFKGVSDGFMRKVVGSTSPFDETDSSIYSRNLSWHSDDVNKHVLRQDTLEPVNSFSDTEESYIQENQEQKGVGSTAQANGWHSDNELNAKGFPPRVIKQ GDESRTLGLEKKHVLEEKSKRINHGGFSVENSAVVSSHMDDPVGMPPEWTPSNVSLPLLNLVDKVFQLKRRGWLRRQVFWISKQILQLIMEDAIDDWLLR PIYWLRREDTIALGIQWVQDILWPEGIFFTRTGGAQSKVDDDQPNLIPFQISQLGGSKVSNKGSFEEQLEAARRASDIKKMLFDGAPSTLVSLIGTKQYK RCARDIFYFTQSTICVKQLTYGILELLVLSVFPELRDLLLGLNEKMRAPPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15900			Phox-associated domain;Phox-li...		Potri.009G108300 [exp]	0	1
AT1G09730			Cysteine proteinases superfami...		Potri.002G105700 [exp]	2.23	0.8731
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.004G174700 [exp]	2.82	0.8644
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	3.46	0.8752
AT4G39420			unknown protein		Potri.007G078650 [exp]	4.24	0.8776
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.004G147800 [exp]	4.89	0.8813
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Potri.008G050400 [exp]	6.70	0.8488
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Potri.018G118800 [exp]	8.48	0.8674
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.009G015000 [exp]	9.74	0.8333
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.005G114300 [exp]	12.68	0.8647
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	15.00	0.8641

Compare expression of checked genes

Potri.009G108300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.