Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 555 / 0 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 538 / 0 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 499 / 5e-174 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT3G25180 432 / 6e-148 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT2G25160 414 / 2e-140 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT4G37370 319 / 6e-104 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT5G07990 318 / 5e-103 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37330 315 / 2e-102 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37320 312 / 4e-101 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37360 306 / 1e-98 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G037500 [exp] 620 / 0 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037300 [exp] 560 / 0 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 525 / 0 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037600 [exp] 518 / 0 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 518 / 0 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 515 / 4e-180 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.001G334700 [exp] 514 / 6e-180 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037900 [exp] 511 / 1e-178 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G038000 [exp] 510 / 7e-178 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032745 [exp] 527 / 0 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10007837 [exp] 523 / 0 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011657 [exp] 505 / 3e-171 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 485 / 3e-168 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 484 / 8e-168 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 473 / 2e-163 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 469 / 5e-162 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 455 / 1e-156 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038203 [exp] 456 / 2e-156 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Lus10025901 [exp] 443 / 2e-151 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.009G108600.3 pacid=42771824 polypeptide=Potri.009G108600.3.p locus=Potri.009G108600 ID=Potri.009G108600.3.v4.1 annot-version=v4.1 ATGCCTCCAGAGGTAGCAGGGTCATGGCCTGTTATTGGCCACCTACATCTTCTTGGAAGAAGAAACCAGCTGCTGCATAAAACACTAGGGGGCATGGCAG ATGATTATGGGTCAATCTTCTCTATCCGCCTTGGAATTCATCCAACAATTGTGGTGAGCGATTGGGAAATTGTGAAAGAATGTTTCACTGCAAATGATAG GGTCTTTTCCACACGTCCAAAATCCTTAGCATTAAAGATCATGGGCTATAACCAAACCACGTTCGGCTTTGCACCGTATGGGCGATATTGGCGTGATATG AGGAAGTTAGTCATGGTTGAACTCCTCTCCAATCATAGGCTTGAGTTGCTCAAGCATGTAAGGGACACAGAAACCAGTTTGCTCATGAAAGATTTTTATG AGAAATCGTCAAGGAATGGAGGGCAAGTTGTTGTGGAAATGAAGCAAAGATTAGCGGACATGGCAACGAACATAACAGTTAGAATGATTTCTGGGAAGCG ATATTTTAGTGCCGATGCAAAAGGCAACCAAGAGGCAAAGAGGTGTCAAGAGGCTTTACGAAATTTCTTCTATCTAGTGGGGTTAAATTTGGCTTCAGAT GCTGTTCCATTGTTTAGTTGGCTCGATTTGGTGAAGGGATATATAGGAAAAATGAAAAGAACGGCAAGGGAGTTAGATTGCGTGCTTGGGAGCTGGGTGG ATGAGCATCGAAGAATCAGGCTCAACAGAAGCATCAGCGAGGAGGAGAAAGATTTCATCTATGTAATGCTTTCTATCATGGATGATGGTAACATTTCTGT TGATGAAGCTGACACAACCGTTAAGGCTAGTTGCTTGAGCCTTCTATTGGGAGGCAGTGACACAACAGCGATAGCTCTTACATGGGCACTAGCTTCGCTA CTAAACAACAGAAATATGCTTAAAAAAGCTCAATGTGAGCTTGACACCCACGTGGGAAAGCACCGCGAAGTGGCCGAGACAGACATAAAGAACCTTGTAT ATATGCAAGCCATTGTGAAGGAAACATTCAGACTACACCAGCCAGCACCACTCTCAGGACCAAGGGAAGCCATGGAGGATTGCACTGTAGCTGGCTTCCA CATCCCAGCAGGCACGCGCCTTGTGGTTAACCTCTGGAAGTTGCATCGTGACCCTAACATTTGGTCTAACCCATTGGAATTTCAGCCTGAGAGGTTCCTG AAAGAGCATGCCAATTTGGATGTAAGGGGCCAGGACTTCGAATTCACACCATTCGGGTCTGGAAGAAGAATGTGCCCTGCGGTGTCATTCGCTGTCCAGG TTGTGCACCTGACACTTGCTCGGCTTCTTCATGGGTTTGAATTGAGGACAGTCTCGGATAATCCAGTCGATATGACTGAAAGCCCTGGATTGACAGTCCC CAAAGCAACACCATTGGAGGTTGTCCTCAGGCCAAGGTTACCTTCCATCGCTTACGAATTCTAA
AA sequence Show only first row Show all	>Potri.009G108600.3 pacid=42771824 polypeptide=Potri.009G108600.3.p locus=Potri.009G108600 ID=Potri.009G108600.3.v4.1 annot-version=v4.1 MPPEVAGSWPVIGHLHLLGRRNQLLHKTLGGMADDYGSIFSIRLGIHPTIVVSDWEIVKECFTANDRVFSTRPKSLALKIMGYNQTTFGFAPYGRYWRDM RKLVMVELLSNHRLELLKHVRDTETSLLMKDFYEKSSRNGGQVVVEMKQRLADMATNITVRMISGKRYFSADAKGNQEAKRCQEALRNFFYLVGLNLASD AVPLFSWLDLVKGYIGKMKRTARELDCVLGSWVDEHRRIRLNRSISEEEKDFIYVMLSIMDDGNISVDEADTTVKASCLSLLLGGSDTTAIALTWALASL LNNRNMLKKAQCELDTHVGKHREVAETDIKNLVYMQAIVKETFRLHQPAPLSGPREAMEDCTVAGFHIPAGTRLVVNLWKLHRDPNIWSNPLEFQPERFL KEHANLDVRGQDFEFTPFGSGRRMCPAVSFAVQVVHLTLARLLHGFELRTVSDNPVDMTESPGLTVPKATPLEVVLRPRLPSIAYEF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.009G108600 [exp]	0	1
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108832 [exp]	1.00	0.9897
AT2G41970			Protein kinase superfamily pro...		Potri.016G059600 [exp]	2.82	0.9033
AT1G11300			protein serine/threonine kinas...		Potri.004G027533 [exp]	3.74	0.9174
					Potri.006G028101 [exp]	4.24	0.9140
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.015G133100 [exp]	5.91	0.9144	AAT1.2,PtrCAT12
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.018G138100 [exp]	6.00	0.9007
AT1G08530			unknown protein		Potri.019G030400 [exp]	8.83	0.8837
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Potri.016G110100 [exp]	9.89	0.8976	UCP2.3
AT1G35710			Protein kinase family protein ...		Potri.019G120733 [exp]	21.35	0.8744
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094600 [exp]	28.56	0.8777

Compare expression of checked genes

Potri.009G108600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.