Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49470 307 / 1e-104 Family of unknown function (DUF716) (.1) AT1G55230 188 / 4e-58 Family of unknown function (DUF716) (.1) AT1G55240 176 / 2e-53 Family of unknown function (DUF716) (.1) AT5G19870 155 / 1e-45 Family of unknown function (DUF716) (.1) AT1G32120 117 / 4e-29 unknown protein AT5G13890 44 / 0.0001 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009000 [exp] 186 / 3e-57 AT1G55230 364 / 7e-127 Family of unknown function (DUF716) (.1) Potri.003G216500 [exp] 186 / 3e-57 AT1G55230 383 / 3e-134 Family of unknown function (DUF716) (.1) Potri.003G216600 [exp] 176 / 2e-53 AT1G55230 419 / 9e-149 Family of unknown function (DUF716) (.1) Potri.001G008900 [exp] 159 / 1e-46 AT1G55230 345 / 3e-119 Family of unknown function (DUF716) (.1) Potri.001G132800 [exp] 116 / 1e-30 AT1G32120 377 / 2e-122 unknown protein Potri.003G100700 [exp] 112 / 3e-29 AT1G32120 382 / 2e-124 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023842 [exp] 377 / 3e-132 AT1G49470 275 / 6e-92 Family of unknown function (DUF716) (.1) Lus10021008 [exp] 358 / 5e-125 AT1G49470 257 / 2e-85 Family of unknown function (DUF716) (.1) Lus10039191 [exp] 156 / 1e-45 AT1G55230 391 / 1e-137 Family of unknown function (DUF716) (.1) Lus10013749 [exp] 155 / 4e-45 AT1G55230 386 / 1e-135 Family of unknown function (DUF716) (.1) Lus10014806 [exp] 127 / 5e-35 AT1G32120 424 / 1e-140 unknown protein Lus10038547 [exp] 127 / 6e-35 AT1G32120 429 / 3e-142 unknown protein Lus10011779 [exp] 47 / 6e-06 AT1G32120 69 / 9e-13 unknown protein Lus10041505 [exp] 46 / 2e-05 AT5G13890 335 / 2e-115 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Lus10012588 [exp] 46 / 2e-05 AT5G13890 341 / 9e-118 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Lus10028821 [exp] 45 / 3e-05 AT3G01360 289 / 5e-97 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [poplar] [flax] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Potri.009G108900.1 pacid=42772296 polypeptide=Potri.009G108900.1.p locus=Potri.009G108900 ID=Potri.009G108900.1.v4.1 annot-version=v4.1 ATGGGCACATTTGTAGGTCACATTGTACCTGGTTTAGCCTTAACCCTTCTCGGGTTATGGCACACCGTTAACACCATCAGAGCCTTCTGCAACAAAGGCT GTACTAACTTTACTGTAAAGTTCTGGTACCCATTTTATGGCCCTGTTTCTAGACTGAAACACTTGGAGCTCATCTTCATTCTATCTTTCTCCGTCTTGGC GATTTTTATGCAACTTTTGGACTTCCCTTCCCTTCGCTTTTCTTTTAAGCTTGATAGCTTTGAGCATGCAAGCATATTTCTCCACCTTGCCATATTTGCA GGTTTTACTCTTTCCGCAGAGATATCCCAGTCTTCTGATATCCTTTCTGGCGTCAGTGGTATTCTTGCAGCCTTTGTCTTTGGCCAAGAACTTTTCCTTC TGCATTTCCACTCCACTGATCATGTTGGACTCGAAGGTCATTATCATTGGCTCTTGCAGCTCATCGTGTTTGTCTCTCTTTTGGCAGCTTTAGCCGCAAC TAATTTTCCAAACAGTTTTCCTGCGGCTCTTGTCCTTTCAATCTCAGTTGTATTTCAAGGATGTTGGTTTATGAACATGGGGTTTATGCTGTGGTTTCCT GATTTTATTCCAGAGGGCTGCGTTATGCAGTTTGCTGAGGCCAGCATTGATGATATACATGGAGCAGTCACTTGTGGATCCCTTGCCGCAGAATTAAGAG CTACAGCACTGGCGAATCTGCAATTCAGCTGGATACTTGCTGGAATTTTGTTGCTCACAGGGTGTATGTGCCTGAAATTAGCTAGAAAGTGCACCCCAAT AAGCCAGTCAACAGAGTATGAGCAACTTCACAGTAGAGGTGTCCCTATAGCCATTGATGGCTTCAAGCAAACTGATCCTTGA
AA sequence Show only first row Show all	>Potri.009G108900.1 pacid=42772296 polypeptide=Potri.009G108900.1.p locus=Potri.009G108900 ID=Potri.009G108900.1.v4.1 annot-version=v4.1 MGTFVGHIVPGLALTLLGLWHTVNTIRAFCNKGCTNFTVKFWYPFYGPVSRLKHLELIFILSFSVLAIFMQLLDFPSLRFSFKLDSFEHASIFLHLAIFA GFTLSAEISQSSDILSGVSGILAAFVFGQELFLLHFHSTDHVGLEGHYHWLLQLIVFVSLLAALAATNFPNSFPAALVLSISVVFQGCWFMNMGFMLWFP DFIPEGCVMQFAEASIDDIHGAVTCGSLAAELRATALANLQFSWILAGILLLTGCMCLKLARKCTPISQSTEYEQLHSRGVPIAIDGFKQTDP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49470			Family of unknown function (DU...		Potri.009G108900 [exp]	0	1
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	1.00	0.9000	Pt-FRD3.1
AT4G33420			Peroxidase superfamily protein...		Potri.004G134800 [exp]	6.92	0.8585
AT2G37130			Peroxidase superfamily protein...		Potri.006G129900 [exp]	8.30	0.8133
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.018G112000 [exp]	10.90	0.8194
AT3G43630			Vacuolar iron transporter (VIT...		Potri.002G069400 [exp]	11.61	0.8590
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.017G124700 [exp]	12.24	0.8545	Pt-HBGGPPS2.3
AT3G47510			unknown protein		Potri.015G062300 [exp]	13.96	0.8242
					Potri.001G379400 [exp]	14.83	0.8304
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	16.43	0.8086	Pt-ATHK1.2
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Potri.008G130100 [exp]	17.43	0.8402

Compare expression of checked genes

Potri.009G108900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.