Plant FIBer expression Database

Potri.009G109001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15630 162 / 3e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT5G01110 43 / 3e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT1G11710 42 / 8e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT1G71060 40 / 0.0004 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT3G16890 40 / 0.0004 PPR40 pentatricopeptide (PPR) domain protein 40 (.1)
AT2G39230 39 / 0.0007 LOJ LATERAL ORGAN JUNCTION (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G147700
[exp]
268 / 1e-87 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.011G003700
[exp]
49 / 4e-07 AT1G11710 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.004G149400
[exp]
45 / 7e-06 AT2G15980 477 / 4e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.001G276500
[exp]
42 / 7e-05 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.006G049400
[exp]
42 / 0.0001 AT1G79540 787 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.006G250700
[exp]
40 / 0.0005 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012037
[exp]
182 / 2e-54 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Lus10008650
[exp]
45 / 1e-05 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Lus10020712
[exp]
41 / 0.0002 AT2G15980 408 / 4e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10026747
[exp]
41 / 0.0002 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF01535 PPR PPR repeat
Representative CDS sequence
>Potri.009G109001.1 pacid=42771216 polypeptide=Potri.009G109001.1.p locus=Potri.009G109001 ID=Potri.009G109001.1.v4.1 annot-version=v4.1
ATGCATTCTTCTCAGTGGCATTTTGTCAAACACTTTGCACCAAAAATAACTCCTTCACTTATTTCAACTACTATTATTAATCTCCATAAAACCCCTGATT
TATCCTTCCAGTTTGTAATCCATATTGGATTTAATGGTGTTGATATCAGAAGCAGGTACCTTGCTATGGCGGCAACCTCTCACGCACCGAACCCAAAACC
CACACTGCAGCTCTTGAAAGAAACTAATAATAACGGGGCTTATAGTATCAGGGAGGTTTTTAATGAGCTGGGAGTTGCAAGAGATGTCTTAGGTGGTAAA
AGTTATGTTTTTTATGACTTGTTGATAAGGGCTTGTTGTGAATTGAAGAGGAGTGATGATGCATTTGAGTGTTTTGATATGATGAAGGGAAAGGGTGTAA
TTCCTTGTGTTCATGCTTGTAATGATATCTTGAGTTTGTTTCTGAAGTTAAATACGACAGAGAAGGCGCGGGTTCTGTATGCATAG
AA sequence
>Potri.009G109001.1 pacid=42771216 polypeptide=Potri.009G109001.1.p locus=Potri.009G109001 ID=Potri.009G109001.1.v4.1 annot-version=v4.1
MHSSQWHFVKHFAPKITPSLISTTIINLHKTPDLSFQFVIHIGFNGVDIRSRYLAMAATSHAPNPKPTLQLLKETNNNGAYSIREVFNELGVARDVLGGK
SYVFYDLLIRACCELKRSDDAFECFDMMKGKGVIPCVHACNDILSLFLKLNTTEKARVLYA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G15630 Pentatricopeptide repeat (PPR)... Potri.009G109001
[exp]
0 1
AT5G61370 Pentatricopeptide repeat (PPR)... Potri.012G068400
[exp]
2.82 0.9592
AT1G03540 Pentatricopeptide repeat (PPR-... Potri.013G145000
[exp]
3.00 0.9504
AT1G05670 Pentatricopeptide repeat (PPR-... Potri.010G035700
[exp]
3.46 0.9501
AT1G43760 DNAse I-like superfamily prote... Potri.002G000350
[exp]
5.29 0.9470
AT2G33680 Tetratricopeptide repeat (TPR)... Potri.006G053100
[exp]
6.00 0.9420
AT1G79490 EMB2217 embryo defective 2217, Pentatr... Potri.010G173400
[exp]
6.70 0.9333
AT2G01390 EMB3111 EMBRYO DEFECTIVE 3111, Tetratr... Potri.005G127500
[exp]
7.74 0.9474
AT5G46100 Pentatricopeptide repeat (PPR)... Potri.011G057900
[exp]
8.48 0.9373
AT5G37570 Pentatricopeptide repeat (PPR-... Potri.006G207500
[exp]
8.94 0.9495
AT3G15930 Pentatricopeptide repeat (PPR)... Potri.003G031600
[exp]
8.94 0.9396

Potri.009G109001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.