Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23460 807 / 0 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 689 / 0 XLG2 extra-large GTP-binding protein 2 (.1) AT1G31930 610 / 0 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT2G26300 146 / 6e-38 ATGPA1, GPALPHA1, GPA1 ,GP ALPHA 1 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) AT4G01090 44 / 0.0007 Protein of unknown function (DUF3133) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G148300 [exp] 1444 / 0 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.007G035200 [exp] 867 / 0 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 818 / 0 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.012G042500 [exp] 637 / 0 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.015G031100 [exp] 627 / 0 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 624 / 0 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 615 / 0 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.006G219500 [exp] 146 / 8e-38 AT2G26300 645 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.018G048600 [exp] 139 / 4e-35 AT2G26300 659 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023838 [exp] 1006 / 0 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 903 / 0 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10019655 [exp] 776 / 0 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10000743 [exp] 709 / 0 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10010421 [exp] 593 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 582 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10003115 [exp] 138 / 1e-34 AT2G26300 663 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10004784 [exp] 134 / 2e-33 AT2G26300 665 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10021013 [exp] 65 / 1e-11 AT4G34390 61 / 4e-11 extra-large GTP-binding protein 2 (.1) Lus10042206 [exp] 53 / 7e-07 AT1G31930 54 / 1e-07 extra-large GTP-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00503 [poplar] [flax] G-alpha G-protein alpha subunit
Representative CDS sequence Show only first row Show all	>Potri.009G109400.1 pacid=42772623 polypeptide=Potri.009G109400.1.p locus=Potri.009G109400 ID=Potri.009G109400.1.v4.1 annot-version=v4.1 ATGGCTGGGGCTTTGAGGAAAATTTTGCCGTTTAGGTCTGCAATTCAGGTAGAAAAGGAAGACGAAGACAAGCATAACAGTTTTGAATTCTCATTTGCTG TGGTATATTCTGGTCCTCTGGTCACTTATGATGTTCCTCGAGCAGTGCCTGTCGATTTAAAGCAGATCCCAGTTGCTTCTCCCGTGATTGGCTCAGGCTC TTTGACGAGTGATGTGTCATTGCCAGTTGTACAGCCTATTGTAAAGTCTAACAGGAAACTGTCCGAGAAGCCAAATTTAGTCTCGGATCGGACTGTTTGC TTAGACACAGATGCGGTCATGAACGGAAATGGTATGCCATGTGAAGCATCTAGGGTAGATGACTCGAGTGCTTCGCATTGTGCAAATGATGATGAGTGTA GACCAAAATTATCTGATGGAATACGAAGTTCTGGTAGATTGGATTTTCGCAATGGTTCTGTTGGTTCTGGTGAATTACCAGGAAGCTTGGAAGTGTCGGA ATTGCCTGACGGTAACGAATATGCAGGTCAAGACTCTCGTGAATATATGAATCCCACTAATTCTGAATCAATAGAATCTGAAAGCTCACACAGTAATTCA TCTGAGATTTTTTCTTGCCAAGAGGAGGATCATAATGAAGAAGCTCCTGGCCATGTCAGAAAGACATCAATTGTAACTTTCCGTGATCCCGAATCAAATG ACGTAGTGGACAATGAATCTGATGTACATGACACTGACAGTAGTGTCCCTGGGAGGCATATAGCTGTAAGGCGTGGGAAGAAAGGGACCTGCTATCGATG CATGGAGGGAAGCAGGCTTACTAATAAGGAGGTTTGCATTGTTTGTGGCGCAAAGTATTGTTCAAGTTGTGTGATAAGAGCAATGGGATCAATGCCAGAA GGAAGAAAGTGTGTTACTTGCATTGGTCAAAGGATTGACGAGTCAAGGCGAAAGAGCTTGGGTAAATGCTCTTGGATGCTAAAGCATCTATTTCCTGTCG TCGAAGTTAAACAGATAATGGTTTCTGAGAGATCATGTGCGGTGAATCAGCTACCACCAGAACTCATTTATGTAAATCGACAGCGTCTTTCTAAACAGGA GCTATTCCTACTGCAGACCTGCCCACACCCACCCAAAAAATTAAAACCAGGATACTACTGGTATGATAAAGTATCTGGTTTTTGGGGAAAGGAAGGACGG AAGCCTTGTCAAATAATCAGTCCCCAATTGACTGTCGGGGGTCACATCCAGGCAGATGCTAGCTATGGAAATACTAACATAATGATAAATAATCGCAAGA TAACTACAACAGAGCGCTTAATGCTGCGGCTGGCAAAGGTGAAATGTGAAGGAGAAACTCACCTGTGGGTTAGTGCAGAGGGTGATTACCAGGAAGAGGG AATGAATAACGTAAAAGGGAAAATATGGACAAAGGCTGGAGCAAAGCTAATATGTGCTGTCCTGTCTCTGCCAACTCCTCCTGATTTTACCAGTCCTAGT GCGGAGGGAGTGAATGATGTAATGGCAAGCGACCTTGAGCAGAAAACACTTCATAAGCTTCTTCTAGTTGGTTCTGAAAAATCTGGCACATGTACCATAT TTAAACAGGCAAAAATTGTATACAACATTCCTTTTTCTGAAGATGAGCGTCAAAGTATCAAGTCTATTATTCAATGCAGTTTGTATGGCTATATGGGTAT GCTGCTTGAAGGGCGTGAAAGATTTGAAGAAGAATGCTTGATTGATAAAAGAAGGAAGTTTGTGCACCAACATAGTTCTTCAGGTCAGATTGACCGTAAA ACAATATATTCTATTGGACCAAGACTGAAAGCTTTCTCGGATTGGCTCCTCCAAGTAATAGTGTCTGGTAATTTGGAAACCAGTTTCCCTGCTGGTGAAT ACGCACCTTTAGTTGAGGAATTGTGGAGAGATGGAGCCTTTCTAGCCACATACAACAGGAGGAACGAACTAGAATTGCTACCAAGGGCTGCCACTTATTT CCTAGAACGGGCCGTTGAGATTGCAAGGCCAGACTACCAGCCATCTGATATGGACATCTTGTATGCTGAGGGAATTAGCTCATCCAAGGGGCTTTCTTGC ATGGAATTTTCATTTCCCAAGCTGGCTCAAGATTGCTGCGAGAACTTTGGCTATCAGCATGATCCCTTGCTGAGGTATCAACTCATCAGAGTTCATCCCA CAACCCTCGGAGGAAATTGCAAATGGCTGGAGATGTTTGAGGATGTTGATATTGTCTTATTTTGTGTTTCATTGATTGATTATGATGAGTTTTCTGAAGA CAACAACGGAGTTCCCATCAACAAGATGATTGCAAGCAGGCAGCTATTTGAACGCATTGCCACTCATCCAACCTTTGAAGAGAAGAAGTTCCTTCTTATA CTGAATAAGTTTGACCTGCTCGAGGAAAAGATTGAACAAGTTCCGCTGACACGATGCGAATGGTTTCATGACTTCAATCCTGTGATGGGCAATAATCCCA ACAGCAGCAGAAGTACCAACTCTCCATTGGAACTCCGTGCCTTCCAATATATTGCGGTAAAGTTCAAGAGATTGTTCAATTCTCTTACTGACAGGAAGTT GTATGTTTCAAAATGTACTGGTTTGGAACCTGATAATGTTGATGAAGCTCTCAAATATGCAAGAGAAGTTCTGAGGTGGGAGCAAGAGGAACCTAACTAT CACAACAACGAGCTATCTTCTACTAGCATAGAGGCAAGTTCATCCTCATGA
AA sequence Show only first row Show all	>Potri.009G109400.1 pacid=42772623 polypeptide=Potri.009G109400.1.p locus=Potri.009G109400 ID=Potri.009G109400.1.v4.1 annot-version=v4.1 MAGALRKILPFRSAIQVEKEDEDKHNSFEFSFAVVYSGPLVTYDVPRAVPVDLKQIPVASPVIGSGSLTSDVSLPVVQPIVKSNRKLSEKPNLVSDRTVC LDTDAVMNGNGMPCEASRVDDSSASHCANDDECRPKLSDGIRSSGRLDFRNGSVGSGELPGSLEVSELPDGNEYAGQDSREYMNPTNSESIESESSHSNS SEIFSCQEEDHNEEAPGHVRKTSIVTFRDPESNDVVDNESDVHDTDSSVPGRHIAVRRGKKGTCYRCMEGSRLTNKEVCIVCGAKYCSSCVIRAMGSMPE GRKCVTCIGQRIDESRRKSLGKCSWMLKHLFPVVEVKQIMVSERSCAVNQLPPELIYVNRQRLSKQELFLLQTCPHPPKKLKPGYYWYDKVSGFWGKEGR KPCQIISPQLTVGGHIQADASYGNTNIMINNRKITTTERLMLRLAKVKCEGETHLWVSAEGDYQEEGMNNVKGKIWTKAGAKLICAVLSLPTPPDFTSPS AEGVNDVMASDLEQKTLHKLLLVGSEKSGTCTIFKQAKIVYNIPFSEDERQSIKSIIQCSLYGYMGMLLEGRERFEEECLIDKRRKFVHQHSSSGQIDRK TIYSIGPRLKAFSDWLLQVIVSGNLETSFPAGEYAPLVEELWRDGAFLATYNRRNELELLPRAATYFLERAVEIARPDYQPSDMDILYAEGISSSKGLSC MEFSFPKLAQDCCENFGYQHDPLLRYQLIRVHPTTLGGNCKWLEMFEDVDIVLFCVSLIDYDEFSEDNNGVPINKMIASRQLFERIATHPTFEEKKFLLI LNKFDLLEEKIEQVPLTRCEWFHDFNPVMGNNPNSSRSTNSPLELRAFQYIAVKFKRLFNSLTDRKLYVSKCTGLEPDNVDEALKYAREVLRWEQEEPNY HNNELSSTSIEASSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	0	1
AT2G40095			Alpha/beta hydrolase related p...		Potri.010G189600 [exp]	1.00	0.9360
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019800 [exp]	1.41	0.9243
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009500 [exp]	2.00	0.9198
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	2.44	0.9204
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Potri.004G050000 [exp]	2.64	0.9160
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017666 [exp]	4.24	0.9100
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048700 [exp]	4.24	0.9162
AT3G24090			glutamine-fructose-6-phosphate...		Potri.019G054500 [exp]	6.16	0.8900
AT1G66930			Protein kinase superfamily pro...		Potri.017G117400 [exp]	6.32	0.8897
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017600 [exp]	6.63	0.8890

Compare expression of checked genes

Potri.009G109400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.