Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18950 554 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 548 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 529 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 523 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 496 / 8e-174 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 442 / 2e-154 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 283 / 2e-91 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 262 / 4e-83 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 258 / 1e-81 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 252 / 9e-80 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G148400 [exp] 776 / 0 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 550 / 0 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 538 / 0 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 530 / 0 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 524 / 0 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 279 / 5e-90 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 274 / 5e-87 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 265 / 4e-84 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 263 / 9e-84 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011655 [exp] 548 / 0 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 533 / 0 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 517 / 0 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 516 / 0 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012036 [exp] 501 / 8e-176 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 488 / 4e-171 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 474 / 1e-165 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023836 [exp] 450 / 9e-155 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016779 [exp] 417 / 6e-142 AT3G50390 435 / 2e-148 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 268 / 2e-85 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.009G109500.1 pacid=42772048 polypeptide=Potri.009G109500.1.p locus=Potri.009G109500 ID=Potri.009G109500.1.v4.1 annot-version=v4.1 ATGAGACACGAAAGAGGTGGCACCATGTTTGCAGAACTCTCAATACACCGACCAACTTTTGGTTCTCTCTTGCATTCAGATCCTGCTTTTTTTTCTAATC AAGAAGAGGTCGACGATTCTAGCAACAAAAACAGCCCAACATCTAGCAATATGAGTCCTAGATATTACAATGGCAGCACCCCGCCAAGTGGTGAGGGCTC TCCTTACCTCTCGCCATGGAACCAGCCATCTCCATACACTAAATCTCCATGGGTAATACCATCTCCAGTCAACCATAGCTTCTCTAAGAATGGCCTTGTT GGATCCCTTGCACGTGAAGAAGGCCATGTTTATTCTCTAGCTGCTTCTGGTGATTTGCTATTCACTGGCTCTGATAGCAAGAACATACGTGTATGGAATA ATTTGAAGGAGTTTGCTGGGTTTAAATCCAACAGTGGCTTGGTTAAGGCCATTGTTATACACGGTGACAAGATTTTCACTGGTCATCAAGATGGCAAGAT CAGGGTATGGAGGGCATCTTCCCGAAATCCTAGTGCTTACAAACGAGTTGGAACCGTACCAACTCTTAAAGATTACGTCAAAAGTTCTGTGAACCCCAAG AACTACGTAGAAGTTCGTAGACATCGCAACGTTTTGCGTATCAAGCATTTCGACGCCGTTTCATGCCTGAGCCTGAACGAAGATCAGGGTTTATTATACT CAGGATCCTGGGACAAAACCCTAAAAGTTTGGCGAACTTCAGACTATAAATGCCTTGAATCAATTAACGCACACGACGACGCCATAAATTCAGTCGTCAC CGGGTTTGATTCGTTGGTGTTTACCGGCTCCGCTGATGGAACAGTAAAAGTGTGGAGAAGGGAGCTTCAAGGGAGAAGAACCGGGCACTTCTTGGTTCAA ACACTGTTAAAACATGAAAACGCGGTAACAGCGCTCTCAGTAAATCAAGAATCAGCGGTAATTTACTGCGGATCATCCGATGGGCTGGTAAATTTCTGGG AACGTGAGAAGCACTTGTCACATGGTGGGGTCCTTCGGGGCCACAAAATGGCCGTCCTATGCCTGGCGTCTGCTGGTAATTTGGTGTTTAGTGGGTCCGC CGATAAAAGTATTTGTGTTTGGCGGAGGGAGGCTGGTGGGGTCCATATTTGCTTGTCAGTTTTAACTGGTCATGGTGGACCGGTGAAATGCCTGGCCGTT GAAGAAGATCGAGAATCTGATAAAGGAGATCAACATTGGATAGTGTATAGCGGGAGTTTAGACAAATCTGTAAAGGTCTGGCGCGTGTCTGAGAACGCCC CAGAGTGGAGGGGGTATCAATCACCTAGAATGAGTTCCTCTTCACCGACCCAAAGCAAAAGACGATATCATGGTTAG
AA sequence Show only first row Show all	>Potri.009G109500.1 pacid=42772048 polypeptide=Potri.009G109500.1.p locus=Potri.009G109500 ID=Potri.009G109500.1.v4.1 annot-version=v4.1 MRHERGGTMFAELSIHRPTFGSLLHSDPAFFSNQEEVDDSSNKNSPTSSNMSPRYYNGSTPPSGEGSPYLSPWNQPSPYTKSPWVIPSPVNHSFSKNGLV GSLAREEGHVYSLAASGDLLFTGSDSKNIRVWNNLKEFAGFKSNSGLVKAIVIHGDKIFTGHQDGKIRVWRASSRNPSAYKRVGTVPTLKDYVKSSVNPK NYVEVRRHRNVLRIKHFDAVSCLSLNEDQGLLYSGSWDKTLKVWRTSDYKCLESINAHDDAINSVVTGFDSLVFTGSADGTVKVWRRELQGRRTGHFLVQ TLLKHENAVTALSVNQESAVIYCGSSDGLVNFWEREKHLSHGGVLRGHKMAVLCLASAGNLVFSGSADKSICVWRREAGGVHICLSVLTGHGGPVKCLAV EEDRESDKGDQHWIVYSGSLDKSVKVWRVSENAPEWRGYQSPRMSSSSPTQSKRRYHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18950			Transducin/WD40 repeat-like su...		Potri.009G109500 [exp]	0	1
AT2G21490		LEA	dehydrin LEA (.1)		Potri.004G158500 [exp]	1.41	0.9267
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.017G102500 [exp]	2.44	0.9206
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067300 [exp]	2.44	0.9265
AT1G67850			Protein of unknown function (D...		Potri.008G185600 [exp]	3.46	0.8844
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134450 [exp]	4.89	0.8829
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.012G141300 [exp]	5.00	0.9081
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.009G081400 [exp]	5.29	0.8838
AT5G57500			Galactosyltransferase family p...		Potri.018G094000 [exp]	6.92	0.9145
					Potri.006G044900 [exp]	9.59	0.8317
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.012G002700 [exp]	10.24	0.8561

Compare expression of checked genes

Potri.009G109500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.