Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AOS.5,CYP74C8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42650 480 / 1e-166 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT4G15440 272 / 4e-87 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT5G04630 52 / 4e-07 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT5G04660 51 / 2e-06 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) AT5G25180 48 / 1e-05 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT3G10560 46 / 4e-05 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT3G61040 46 / 4e-05 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT3G20120 46 / 4e-05 CYP705A21 "cytochrome P450, family 705, subfamily A, polypeptide 21", cytochrome P450, family 705, subfamily A, polypeptide 21 (.1.2) AT1G33730 46 / 5e-05 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT3G20140 45 / 0.0001 CYP705A23 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G148900 [exp] 763 / 0 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 725 / 0 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 674 / 0 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 529 / 0 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.002G130700 [exp] 522 / 0 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G155800 [exp] 372 / 1e-124 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.009G065000 [exp] 51 / 1e-06 AT5G47990 425 / 1e-144 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.014G102700 [exp] 50 / 2e-06 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G270900 [exp] 49 / 5e-06 AT5G47990 419 / 2e-142 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021015 [exp] 577 / 0 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021019 [exp] 563 / 0 AT5G42650 474 / 6e-164 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10018791 [exp] 469 / 4e-162 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10032739 [exp] 372 / 1e-124 AT5G42650 496 / 8e-173 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10030029 [exp] 348 / 1e-115 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10031540 [exp] 334 / 1e-109 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 315 / 3e-102 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 298 / 4e-96 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 293 / 7e-94 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 290 / 6e-93 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.009G109700.1 pacid=42772586 polypeptide=Potri.009G109700.1.p locus=Potri.009G109700 ID=Potri.009G109700.1.v4.1 annot-version=v4.1 ATGAATATCCTTCCTTCTTCTGAAGAAACATCAGAATTCTCATTAAAATCAATCCCTGGTGACTATGGTCTCCCTTTCTTTGGTGCAATCAGAGATCGTC TAGACTATTTCTATAACCAAGGCAGAGATGAGTTCTTTAGTACGCGTGTCCAGAAATACGAATCCACAATCTTCAAAACAAACATGCCTCCTGGCCCTTT CATTGCCAAAAATCCCAAAGTCATTGCTGTTCTTGATGCAGTCTCGTTTCCAGTCCTCTTTGACACTTCTAAGGTCGAAAAATATAACGTTCTTGATGGT ACTTTCTTTCCCTCGGTATCCTTCACTGGGGGATACCGTGCCTGCGCCTATCTTGACCCTTCTGAGCCTCAACACACCTCTCTCAAATCCTTTTTTATGT CAACTCTAGCATCCAAGCACAATGACTTTATCCCTCTCTTTAGAGCTAGCTTGTCGAAGCTTTTCATTAACATTGAGGATGAAATAGTTTCTCAAAAGAA AGCAAATTTCAACAAGCCTAGTGAGGCCATGTCTTTCGACTTTGTGTTTCGTCTATTTGGAGATAAAGATTCGTCCGATACAAAGGTTGGATCGGAAGGA CCTGCCATCGTTAATAAATGGTTGGCCTTGCAACTTGCACCGCTTGCGACCCTAGGATTACCAAAGTATTTTAAATATCTTGAAGATATTTTCTTGCGTA CATTTCCGTTGCCATTTATCTTTGTAAAGTCTGATTATAACAAGCTTTACGATGCGTTTTATGCGTCTTCGAGTTCGGTCTTAGACAAAGCTGAGAGTCT TGGGATCAAAAGAGATGAAGCTTGCCATAACCTAGTGTTTCTTGCTGGTTTTAATGCTTTTGGGGGCATGAAAGCTTGGTTTCCTACACTGATCAAGTGG GTCGGCACAGCAGGAGAGAAGTTACACGGCCAACTTGCCAATGAAATCAGGACTGTTGTTAAGGAGGAAGGCGGGGTAACTTTCCAAGCATTGGATAAGA TGATTTTGACCAAGTCAGTTGTTTTTGAAGCTTTGAGGATTGAGCCTCCAGTTCCATTCCAATACGGTAAGGCCAGGGATAACATCGTGGTGCATAGTCA TGATGCAGCCTTTGAGATCAAGAAAGGTGAAATGATCTTTGGATACCAACCATTTGCTACAAAGGATCCTAGGATTTTTGATGATCCTGAGGAGTTTGTA GGGCATAGGTTTGTCGGGGATGGAGAGAAGCTATTGAGGTATGTTTATTGGTCAAATGGGCGTGAGACTGAGGATCCAACAGCAGAGAACAAGCAGTGTC CAGGGAAAGATCTAGTGTTACTCCTATCCAGGGTTTTGCTGGTGGAGTTTTTCCTGCGTTATGACACATTTACTGTTAAAACAGCTAGTTCATTGGCTTT GGGGTCAACAGTGACTTTCACTTCTTTGATCAAGGCCAGGAGCACTTGA
AA sequence Show only first row Show all	>Potri.009G109700.1 pacid=42772586 polypeptide=Potri.009G109700.1.p locus=Potri.009G109700 ID=Potri.009G109700.1.v4.1 annot-version=v4.1 MNILPSSEETSEFSLKSIPGDYGLPFFGAIRDRLDYFYNQGRDEFFSTRVQKYESTIFKTNMPPGPFIAKNPKVIAVLDAVSFPVLFDTSKVEKYNVLDG TFFPSVSFTGGYRACAYLDPSEPQHTSLKSFFMSTLASKHNDFIPLFRASLSKLFINIEDEIVSQKKANFNKPSEAMSFDFVFRLFGDKDSSDTKVGSEG PAIVNKWLALQLAPLATLGLPKYFKYLEDIFLRTFPLPFIFVKSDYNKLYDAFYASSSSVLDKAESLGIKRDEACHNLVFLAGFNAFGGMKAWFPTLIKW VGTAGEKLHGQLANEIRTVVKEEGGVTFQALDKMILTKSVVFEALRIEPPVPFQYGKARDNIVVHSHDAAFEIKKGEMIFGYQPFATKDPRIFDDPEEFV GHRFVGDGEKLLRYVYWSNGRETEDPTAENKQCPGKDLVLLLSRVLLVEFFLRYDTFTVKTASSLALGSTVTFTSLIKARST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.009G109700 [exp]	0	1	Pt-AOS.5,CYP74C8
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010500 [exp]	13.67	0.9113
AT4G00680		ADF8	actin depolymerizing factor 8 ...		Potri.003G125500 [exp]	16.03	0.7601	ADF.8,ADF3
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.013G085101 [exp]	16.06	0.8546
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Potri.013G042500 [exp]	17.32	0.7261
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.002G176966 [exp]	21.16	0.8905
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157400 [exp]	24.06	0.9027
AT4G14930			Survival protein SurE-like pho...		Potri.010G088100 [exp]	29.05	0.9004
AT1G02550			Plant invertase/pectin methyle...		Potri.014G119400 [exp]	30.09	0.8451
AT5G06270			unknown protein		Potri.016G073400 [exp]	30.49	0.8179
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Potri.010G190600 [exp]	30.74	0.8168

Compare expression of checked genes

Potri.009G109700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.