Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LACS2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49430 950 / 0 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT1G64400 799 / 0 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT4G23850 781 / 0 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 771 / 0 AMP-dependent synthetase and ligase family protein (.1) AT2G47240 627 / 0 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT5G27600 470 / 2e-157 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 461 / 5e-154 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT2G04350 333 / 2e-104 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 297 / 6e-91 LACS9 long chain acyl-CoA synthetase 9 (.1) AT4G14070 150 / 8e-38 AAE15 acyl-activating enzyme 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G139700 [exp] 811 / 0 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.001G091900 [exp] 809 / 0 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.002G192400 [exp] 626 / 0 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.010G090200 [exp] 473 / 2e-158 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.013G021300 [exp] 453 / 7e-151 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.014G169400 [exp] 318 / 1e-98 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 303 / 2e-93 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.002G084100 [exp] 291 / 1e-88 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 287 / 2e-88 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021021 [exp] 1068 / 0 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10023832 [exp] 1063 / 0 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032380 [exp] 786 / 0 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10001830 [exp] 707 / 0 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10023089 [exp] 684 / 0 AT4G23850 959 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10032840 [exp] 614 / 0 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10002414 [exp] 588 / 0 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10029918 [exp] 462 / 2e-154 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 459 / 3e-153 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 448 / 1e-148 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Potri.009G109900.1 pacid=42771045 polypeptide=Potri.009G109900.1.p locus=Potri.009G109900 ID=Potri.009G109900.1.v4.1 annot-version=v4.1 ATGGAATTCATCGTAAAAGTTGAAGAATCAAGACCTGCAAGTGATGGAAAACCATCAGCAGGGCCTGTTTACAGGTCCATTTATGCCAAAGATGGCCTCA TGGATTTGCCTGCAGGACTAGAGTCTCCTTGGCAGTTCTTTAGTGATTCTGCTCTCAAGAACCCTGAAAACAAAATGCTAGGTAGGCGGCAAGTCATTGA TTCCAAGCAGGTGGGTCCTTATGTGTGGCTGACATACAAAGAGGTTTATGATTCTGCCATGAGGATGGGTTCCGCAATGAGGAGGCGCGGTGTCAATCCT GGAGACCGTTGCGGTATATATGGTTCCAACTGCCCAGAATGGATCACTGCTATGGAGGCTTGCGACAGCCAGGCCATAACATATGTACCACTCTATGACA CTCTTGGGCCTAATGCTGTGGAGTTCATCATCAATCATGCTGAAGTTTCAATAGCCTTTGTCCAAGAGAACAAGCTCTCTTCTATTCTATCTTGCCTTCC AAAGTGCTCTTCAAATTTAAAAACTATTGTCAGCTTTGGAAAAATTTCTGACATGCAAAAGAAGGAAGCTGATGAACTAGGGGTATCTTGCTTTTCATGG GAAGAATTTCCTCAGTTGGGGAGTTTGGATTGTGAATTACCTCCAAAACATAAGACTGATGTCTGCACAATAATGTACACTAGTGGAACAACAGGAGAAC CAAAAGGTGTCATCCTAACCAACGGGGCTCTTGTGGCAGAAGTATTGTCTGTGGACCAGCTACTTTTTCTGACAGACAGAGTGGCTGCAGAAGAAGATTC ATACTTCTCTTTCCTACCCTTGGCCCATGTATATGATCAAGTAATTGAGACCTATTGCATCTACAAAGGTGCCTCAATAGGATTTTGGCAAGGGGATGTA AGATACTTGATGGAGGACATCCAAGAACTGAAGCCAAGTATATTTTGTGGGGTTCCTAGAGTTTATGACCGCATATATACTGGAACACTTGCTAAGGTTT CAGCTGGAGGTGGATTAAAGAAGAAGTTATTTGATTTTGCCTATAACTACAAGTTGGGTTATCTAGAGAAGGGATTTCCACAAGAGAAAGCAGCACCCCT CCTGGACAGGCTTGTCTTCGATAAGACAAAGCAAGCACTAGGGGGGAGAGTACGTATCTTGTTATCTGGTGCTGCTCCTTTGCCTAAGCATGTAGAGGAG TTTTTGAGGGTCACATCCTGTTCTACTTTATCACAGGGATATGGTCTCACTGAAAGTTGTGGGGGCTGTTTCACATCCATAGGCAATGTGTATCCCATGG TGGGAACTGTTGGAGTGCCCATGACAACCATTGAATCAAGACTCGAGTCTGTGCCAGAGATGGGATATGATGCATTATCCAGTGTTCCAAGGGGAGAGAT TTGCCTGAGGGGAAGTACATTGTTCTCTGGTTACCACAAGCGAGAAGATCTAACTAATGAAGTCCTCGTTGATGGATGGTTTCATACAGGTGACATTGGA GAATGGCAACCCAATGGAGCAATGAAGATTATTGACAGGAAAAAGAACATATTTAAGCTATCTCAAGGTGAATACGTTGCTGTAGAGAACCTTGAAAATG TCTACCTGCGATGCCCTCATATAACATCGATTTGGGTCTATGGAAACAGTTTCGAATCATTTCTTGTTGCTGTAGTTGTCCCTGACAGACAGGCACTTGA GGATTGGGCTGCAAACCATAACGAGACTGATGATTTTAAATCGTTATGCAAAAATCTGAAGGCAAGGAAATATATACTCGATGAGCTCAATAGCATTGGT AAAACAAACAACCTTAGAGGATTTGAAATGTTAAAAGCTGTTCATTTGGAACCACATCCATTTGATATGGAGAGGGACCTGATAACTCCAACATTCAAGC TCAAGAGGCCACAATTACTCAAATGTTACAAGGACTGCATTGATCAACTGTACAGTGACGCAAAGGGCTTGAAGGCATGA
AA sequence Show only first row Show all	>Potri.009G109900.1 pacid=42771045 polypeptide=Potri.009G109900.1.p locus=Potri.009G109900 ID=Potri.009G109900.1.v4.1 annot-version=v4.1 MEFIVKVEESRPASDGKPSAGPVYRSIYAKDGLMDLPAGLESPWQFFSDSALKNPENKMLGRRQVIDSKQVGPYVWLTYKEVYDSAMRMGSAMRRRGVNP GDRCGIYGSNCPEWITAMEACDSQAITYVPLYDTLGPNAVEFIINHAEVSIAFVQENKLSSILSCLPKCSSNLKTIVSFGKISDMQKKEADELGVSCFSW EEFPQLGSLDCELPPKHKTDVCTIMYTSGTTGEPKGVILTNGALVAEVLSVDQLLFLTDRVAAEEDSYFSFLPLAHVYDQVIETYCIYKGASIGFWQGDV RYLMEDIQELKPSIFCGVPRVYDRIYTGTLAKVSAGGGLKKKLFDFAYNYKLGYLEKGFPQEKAAPLLDRLVFDKTKQALGGRVRILLSGAAPLPKHVEE FLRVTSCSTLSQGYGLTESCGGCFTSIGNVYPMVGTVGVPMTTIESRLESVPEMGYDALSSVPRGEICLRGSTLFSGYHKREDLTNEVLVDGWFHTGDIG EWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENVYLRCPHITSIWVYGNSFESFLVAVVVPDRQALEDWAANHNETDDFKSLCKNLKARKYILDELNSIG KTNNLRGFEMLKAVHLEPHPFDMERDLITPTFKLKRPQLLKCYKDCIDQLYSDAKGLKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Potri.009G109900 [exp]	0	1	Pt-LACS2.2
AT4G00400		AtGPAT8, GPAT8	glycerol-3-phosphate acyltrans...		Potri.014G085500 [exp]	1.41	0.9501
AT5G26230		MAKR1	membrane-associated kinase reg...		Potri.010G090500 [exp]	3.87	0.9188
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	4.47	0.9087	Pt-BRI1.1
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Potri.018G074500 [exp]	6.00	0.9257
AT3G17180		SCPL33	serine carboxypeptidase-like 3...		Potri.010G149400 [exp]	7.07	0.8825
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.008G217700 [exp]	13.71	0.8745
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Potri.001G323100 [exp]	13.85	0.8833	FBL3,Pt-IPS1.2
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Potri.002G015100 [exp]	17.66	0.8756
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G087000 [exp]	18.00	0.8772
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.009G069100 [exp]	18.02	0.8989

Compare expression of checked genes

Potri.009G109900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.