Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18930 227 / 4e-70 RING/U-box superfamily protein (.1.2) AT3G05200 95 / 3e-21 ATL6 RING/U-box superfamily protein (.1) AT4G40070 92 / 1e-20 RING/U-box superfamily protein (.1) AT5G43420 91 / 6e-20 RING/U-box superfamily protein (.1) AT4G17905 90 / 6e-20 ATL4H RING/U-box superfamily protein (.1) AT4G33565 91 / 7e-20 RING/U-box superfamily protein (.1) AT1G72200 91 / 7e-20 RING/U-box superfamily protein (.1) AT1G23980 91 / 8e-20 RING/U-box superfamily protein (.1) AT2G35000 91 / 1e-19 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT1G04360 90 / 2e-19 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093100 [exp] 100 / 6e-23 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 96 / 1e-21 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 93 / 2e-21 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 95 / 5e-21 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 94 / 5e-21 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.008G165900 [exp] 92 / 3e-20 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 92 / 5e-20 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 91 / 5e-20 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.010G072700 [exp] 90 / 1e-19 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012033 [exp] 144 / 2e-38 AT3G18930 206 / 3e-62 RING/U-box superfamily protein (.1.2) Lus10036466 [exp] 98 / 3e-22 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10013618 [exp] 95 / 1e-21 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10031515 [exp] 94 / 3e-21 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10029794 [exp] 95 / 7e-21 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10004460 [exp] 92 / 5e-20 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10012745 [exp] 91 / 5e-20 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10041134 [exp] 91 / 6e-20 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10035677 [exp] 91 / 7e-20 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1) Lus10000333 [exp] 91 / 9e-20 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.009G110000.3 pacid=42772151 polypeptide=Potri.009G110000.3.p locus=Potri.009G110000 ID=Potri.009G110000.3.v4.1 annot-version=v4.1 ATGATCAAAACCACACCATCCCCTTCTCCCTCACCACACCACCACCACACGTGGGCCCCATCCCCAACTCCCACAATTTCCTCAACCCCTAGAGCCACCG CCCCTTCTTACCAATCCTCACCACCATCACCATCACCGACCTCCAAACTCCCAGTTGACTTCAGCCCAACTTTAATAGCCATGGTGGTAGTAGTCGCTGC CGCCTTCTTAACAATTACATACTCCCGCCTAATTTCCCGTTCCCTCCTCCGTGTCATCCGCCGATGGCGTCGGTGGCGCCGTCGTAGACGCCGCCGTTAC CCCCCCTCCTCAAATGGTGGCCTCGACTCCCCACCTCCACTCTTTGATTCCCCAGAAGGCTTCCATGTTTACTCTCCTTACGGGCTGGACGACGCCGTCA TCAAGACCATCCCTCTCTCACTCTACACCACGAAAAATAGCAATAGCTTTCACAAGCAAATCAAAGACTGTGCTGTTTGCTTGCTTGAATTCGAAGATGA TGAATATGTCCGTACACTTCCTGTTTGCTCGCATGCATTTCATGTTGACTGTATTGATATTTGGCTAAGGTCACACGCGAACTGCCCACTTTGTCGTGCG GGGATTTTCAGAGCCGAGTCTCCATTTATTCCAGTCATGGCCGCAAGAATTCGTCCCAGTCTTGATGAAACAATCCTACGTAGTACTCTTCTTCCGCTCG AACCAATAATTCAAAGCCCACTACGCACTTATTCTGCCGTTGCAGACACAGCTACAGCTACTGTCACGGAGATTACACCATGTCCTGAAGAACCATCACC GCGAAGACATAGTATGAACAATTTTAATACTAATTCTGAGGACAGATTCAATGGTCGTGATCATTTCTTCTTGAAAAGATCTTATTCTTTCGGGTTCGAA CGGAGCTTGGCGTCCGAGAGGATGTTAGTAATGGAGCCAGCTACAGCTTCTCCGTGGAGGTTTAGAAGGGGGGGTTTTTGGAGCAAACGGCCATCACCGT TTGGATCAATATCAAAAGCTAGAGTTTTTTCGTTTAGGCATTATAGAGGGATGAAATCCCCGTTTTTTAGACGGAGAGGATCAGGGTTTTTCCCGTTATC GGAGAGGTTCTCCACCGTAGGCGGAGGAGGCGGTGGTGGGTCGTCTAGGAGGTGTAAGTCTATGGCGAGCCCACAGTTTTTGAGATCATCGGTGGGGTCG AGCATGGCCGCGTTTTCGTCTAGCCGGCTAAGGTGTGGGGACCCCGAGGCACTGCTGTCACCGGAGAGGTTTAACAGGAGGTAG
AA sequence Show only first row Show all	>Potri.009G110000.3 pacid=42772151 polypeptide=Potri.009G110000.3.p locus=Potri.009G110000 ID=Potri.009G110000.3.v4.1 annot-version=v4.1 MIKTTPSPSPSPHHHHTWAPSPTPTISSTPRATAPSYQSSPPSPSPTSKLPVDFSPTLIAMVVVVAAAFLTITYSRLISRSLLRVIRRWRRWRRRRRRRY PPSSNGGLDSPPPLFDSPEGFHVYSPYGLDDAVIKTIPLSLYTTKNSNSFHKQIKDCAVCLLEFEDDEYVRTLPVCSHAFHVDCIDIWLRSHANCPLCRA GIFRAESPFIPVMAARIRPSLDETILRSTLLPLEPIIQSPLRTYSAVADTATATVTEITPCPEEPSPRRHSMNNFNTNSEDRFNGRDHFFLKRSYSFGFE RSLASERMLVMEPATASPWRFRRGGFWSKRPSPFGSISKARVFSFRHYRGMKSPFFRRRGSGFFPLSERFSTVGGGGGGGSSRRCKSMASPQFLRSSVGS SMAAFSSSRLRCGDPEALLSPERFNRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18930			RING/U-box superfamily protein...		Potri.009G110000 [exp]	0	1
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Potri.005G178900 [exp]	2.82	0.8211
					Potri.004G044750 [exp]	4.24	0.8234
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.001G258600 [exp]	6.00	0.7899
AT1G28280			VQ motif-containing protein (....		Potri.004G044800 [exp]	6.70	0.8151
AT1G35830			VQ motif-containing protein (....		Potri.002G094900 [exp]	10.58	0.8180
					Potri.019G057625 [exp]	11.66	0.8156
					Potri.013G062301 [exp]	14.31	0.7693
AT5G12220			las1-like family protein (.1.2...		Potri.001G273600 [exp]	19.59	0.7950
					Potri.017G152420 [exp]	23.34	0.8204
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183799 [exp]	24.69	0.8091

Compare expression of checked genes

Potri.009G110000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.