Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23690 111 / 1e-31 unknown protein AT3G50800 108 / 2e-30 unknown protein AT5G66580 107 / 7e-30 unknown protein AT4G37240 105 / 4e-29 unknown protein AT1G76600 47 / 2e-06 unknown protein AT1G21010 45 / 6e-06 unknown protein AT1G28190 44 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G149600 [exp] 221 / 1e-74 AT4G37240 125 / 5e-37 unknown protein Potri.005G130200 [exp] 124 / 7e-37 AT2G23690 174 / 2e-56 unknown protein Potri.007G033400 [exp] 120 / 3e-35 AT2G23690 165 / 7e-53 unknown protein Potri.009G110700 [exp] 68 / 9e-15 AT5G66580 77 / 2e-18 unknown protein Potri.004G149800 [exp] 63 / 6e-13 AT5G66580 91 / 7e-24 unknown protein Potri.001G070700 [exp] 51 / 5e-08 AT1G28190 150 / 2e-44 unknown protein Potri.003G160000 [exp] 50 / 1e-07 AT1G28190 168 / 4e-51 unknown protein Potri.012G045600 [exp] 47 / 5e-07 AT1G18290 129 / 1e-38 unknown protein Potri.005G259100 [exp] 46 / 3e-06 AT1G21010 186 / 9e-60 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019659 [exp] 110 / 3e-31 AT5G66580 141 / 4e-44 unknown protein Lus10016785 [exp] 98 / 3e-26 AT2G23690 138 / 4e-42 unknown protein Lus10000739 [exp] 95 / 1e-25 AT5G66580 105 / 6e-30 unknown protein Lus10037249 [exp] 52 / 1e-08 AT1G76600 130 / 4e-38 unknown protein Lus10012442 [exp] 51 / 3e-08 AT1G76600 152 / 2e-46 unknown protein Lus10033761 [exp] 49 / 4e-07 AT1G76600 150 / 1e-45 unknown protein Lus10035664 [exp] 45 / 5e-06 AT1G21010 125 / 4e-36 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.009G110600.1 pacid=42772424 polypeptide=Potri.009G110600.1.p locus=Potri.009G110600 ID=Potri.009G110600.1.v4.1 annot-version=v4.1 ATGGGCAATACTTGCAGTTCATGTGAACCCACCTCAGTGGTCACAGCAAACCTGATCTATGAAGATGGCAAACTCGAAGAATTTTCATACTCAATTAGGG TTTCACAGATACTACAAAGAAACCCTACTTGTTTTGTATGCAAAGCAGATGATATGGACTTCGATGAATATGTTTCAGCCATCAATCAAAATGAATATCT TCAGTTAGGTCATCTTTACTTTGTGTTGCCATCAAGTTGGTTAAACAATCCTCTTAGAACTGAACAGATGGCTGCCTTGGCGGTGAAGGCAAGTTTGGCT CTAAAGATGGGTAATGGGGGTGGAGATTGTTGCTGGTGTGGGATAAAGAGGTTGGATCCTGTGATCGAGTGGACCAGCAAGAGCACTAGCGATGAGACTA ATCCGACAGTGGCGACAGGCACGCACCATGAGGGTGGAGGATTTGTTGTGAAAAGAAGAGGGAGGGCTGGTGGCGGAGAAAGGAAATCAACTACAAAACT GAGTGCTATCTTGGAGGAATAA
AA sequence Show only first row Show all	>Potri.009G110600.1 pacid=42772424 polypeptide=Potri.009G110600.1.p locus=Potri.009G110600 ID=Potri.009G110600.1.v4.1 annot-version=v4.1 MGNTCSSCEPTSVVTANLIYEDGKLEEFSYSIRVSQILQRNPTCFVCKADDMDFDEYVSAINQNEYLQLGHLYFVLPSSWLNNPLRTEQMAALAVKASLA LKMGNGGGDCCWCGIKRLDPVIEWTSKSTSDETNPTVATGTHHEGGGFVVKRRGRAGGGERKSTTKLSAILEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23690			unknown protein		Potri.009G110600 [exp]	0	1
					Potri.003G152800 [exp]	1.00	0.8356
AT5G13190		AtGILP	GSH-induced LITAF domain prote...		Potri.001G061900 [exp]	5.47	0.8048
					Potri.004G047932 [exp]	6.32	0.7495
AT4G02090			unknown protein		Potri.002G196900 [exp]	9.21	0.6531
AT5G15500			Ankyrin repeat family protein ...		Potri.018G050600 [exp]	12.00	0.8018
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.015G072400 [exp]	20.00	0.7017
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.001G101100 [exp]	20.24	0.7372
AT5G07360			Amidase family protein (.1.2)		Potri.015G109400 [exp]	24.10	0.7498
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Potri.018G011400 [exp]	27.38	0.7598
AT1G75160			Protein of unknown function (D...		Potri.002G262400 [exp]	43.63	0.7184

Compare expression of checked genes

Potri.009G110600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.