Plant FIBer expression Database

Potri.009G110901 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16060 59 / 1e-11 ATGLB1, ARATHGLB1, NSHB1, AHB1 CLASS I HEMOGLOBIN, hemoglobin 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G110800
[exp]
65 / 1e-13 AT2G16060 253 / 1e-87 CLASS I HEMOGLOBIN, hemoglobin 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005467
[exp]
58 / 5e-11 AT2G16060 237 / 1e-81 CLASS I HEMOGLOBIN, hemoglobin 1 (.1)
PFAM info
Representative CDS sequence
>Potri.009G110901.5 pacid=42772286 polypeptide=Potri.009G110901.5.p locus=Potri.009G110901 ID=Potri.009G110901.5.v4.1 annot-version=v4.1
ATGATGAGTCTCACTATCAGCACTCCTACTTCAAGGACTACTACGATCCTCTCTGATGATACAGGCATCAAGAAATGTGACATAAGAGATGTCTCTAAGC
ATTATGTAATACAAAAATCTGGTCCAAGATTCTTGCATCAGCAATCCATGGAGTTATCATGGGTCAGGAGAGAGGCAGCACTACATGGGCTTGTATGCAG
AACTCCAAAATATTCCAGAAGTAGCTTCCTTTTTCATTTTTTCCTTTTCCCTTGTTATATTTTCTTTGTTTTTGGTATTCATTGTATGATCTGGCTATAT
ACAAAGATTTGGAAAGGATGTAACTGTGTAAGATTAGAAGTTAGTGCATTTAGTGAAGATCCAGAAGCTCTAATGGTCAAATCATGGAATTCCATGAAGA
AGAATGCTGGAGAATTGGGCCTGAAGTTTTTCTTGAGAATCTTTGAGATTGCACCACTGCAAAGAAGCTGTTCTCATTTTTGA
AA sequence
>Potri.009G110901.5 pacid=42772286 polypeptide=Potri.009G110901.5.p locus=Potri.009G110901 ID=Potri.009G110901.5.v4.1 annot-version=v4.1
MMSLTISTPTSRTTTILSDDTGIKKCDIRDVSKHYVIQKSGPRFLHQQSMELSWVRREAALHGLVCRTPKYSRSSFLFHFFLFPCYIFFVFGIHCMIWLY
TKIWKGCNCVRLEVSAFSEDPEALMVKSWNSMKKNAGELGLKFFLRIFEIAPLQRSCSHF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G16060 ATGLB1, ARATHGL... CLASS I HEMOGLOBIN, hemoglobin... Potri.009G110901
[exp]
0 1
AT4G12390 PME1 pectin methylesterase inhibito... Potri.003G113700
[exp]
1.00 0.8922
AT3G44480 COG1, RPP10, RP... recognition of peronospora par... Potri.018G145580
[exp]
2.00 0.8869
AT1G51340 MATE efflux family protein (.1... Potri.016G053600
[exp]
3.46 0.8504
AT3G14460 LRR and NB-ARC domains-contain... Potri.017G121901
[exp]
9.16 0.8278
AT3G61220 SDR1 short-chain dehydrogenase/redu... Potri.002G156800
[exp]
9.64 0.8559
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Potri.001G437100
[exp]
12.80 0.8548
AT2G25180 GARP ARR12 response regulator 12 (.1) Potri.006G262100
[exp]
13.41 0.7977
AT1G17180 ATGSTU25 glutathione S-transferase TAU ... Potri.001G437500
[exp]
16.37 0.7323
AT3G14470 NB-ARC domain-containing disea... Potri.014G005600
[exp]
17.54 0.8250
AT3G14570 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) Potri.011G095100
[exp]
18.46 0.8301 ATGSL04.1

Potri.009G110901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.